Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43309184..43312166-chr3:43313711..43315293,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510734	1.00[EUR][1000 genomes]
rs1105263	1.00[EUR][1000 genomes]
rs17075523	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075612	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1848069	1.00[EUR][1000 genomes]
rs60173579	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60410086	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61676031	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6441770	1.00[EUR][1000 genomes]
rs6763493	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72862031	1.00[EUR][1000 genomes]
rs72862060	1.00[EUR][1000 genomes]
rs72863615	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863618	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863622	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863647	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863656	1.00[EUR][1000 genomes]
rs73831272	1.00[EUR][1000 genomes]
rs7613430	1.00[EUR][1000 genomes]
rs7623284	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43302000-43314000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:43310000-43310400	Enhancers	HMEC	breast
3	chr3:43310000-43310600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:43310000-43310600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr3:43310000-43310600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:43310000-43310800	Enhancers	NHEK	skin

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