Variant report

Variant	rs60173579
Chromosome Location	chr3:43376599-43376600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43371288..43372921-chr3:43375023..43376609,2	MCF-7	breast:

rs_ID	r²[population]
rs10510734	1.00[EUR][1000 genomes]
rs1105263	1.00[EUR][1000 genomes]
rs17075523	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17075612	1.00[EUR][1000 genomes]
rs1848069	1.00[EUR][1000 genomes]
rs60410086	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61676031	1.00[EUR][1000 genomes]
rs6441770	1.00[EUR][1000 genomes]
rs6763493	1.00[EUR][1000 genomes]
rs72862031	1.00[EUR][1000 genomes]
rs72862060	1.00[EUR][1000 genomes]
rs72863608	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863615	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863618	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863622	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863647	1.00[EUR][1000 genomes]
rs72863656	1.00[EUR][1000 genomes]
rs73831272	1.00[EUR][1000 genomes]
rs7613430	1.00[EUR][1000 genomes]
rs7623284	1.00[EUR][1000 genomes]

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43332800-43377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43346000-43377000	Weak transcription	K562	blood
3	chr3:43348400-43378800	Weak transcription	Hela-S3	cervix
4	chr3:43359400-43376600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:43361200-43377800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:43368200-43377000	Weak transcription	Ovary	ovary
7	chr3:43368200-43377200	Weak transcription	Gastric	stomach
8	chr3:43368200-43377600	Weak transcription	Colonic Mucosa	Colon
9	chr3:43368400-43376600	Weak transcription	Osteobl	bone
10	chr3:43368400-43379200	Weak transcription	Stomach Mucosa	stomach
11	chr3:43368400-43379400	Weak transcription	Fetal Brain Male	brain
12	chr3:43368800-43376800	Weak transcription	HepG2	liver
13	chr3:43369000-43377200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:43369000-43378600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:43369200-43376600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:43369400-43379200	Weak transcription	Small Intestine	intestine
17	chr3:43369600-43377200	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:43370200-43377200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:43370400-43376800	Weak transcription	Brain Anterior Caudate	brain
20	chr3:43370400-43376800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr3:43370400-43377000	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:43370400-43377600	Weak transcription	Right Ventricle	heart
23	chr3:43370600-43376600	Weak transcription	NHEK	skin
24	chr3:43370600-43376800	Weak transcription	HMEC	breast
25	chr3:43371200-43376800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr3:43372400-43376600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr3:43372400-43377000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:43372400-43377200	Weak transcription	NHLF	lung
29	chr3:43372600-43377200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:43372800-43376800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr3:43372800-43379200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr3:43373000-43377000	Weak transcription	Psoas Muscle	Psoas
33	chr3:43373000-43377200	Weak transcription	Brain Angular Gyrus	brain
34	chr3:43373200-43376600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:43373200-43376600	Weak transcription	HSMM	muscle
36	chr3:43373200-43376600	Weak transcription	NHDF-Ad	bronchial
37	chr3:43373200-43376800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr3:43373200-43376800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr3:43373200-43379200	Weak transcription	HSMMtube	muscle
40	chr3:43373400-43376600	Strong transcription	Primary B cells from peripheral blood	blood
41	chr3:43373400-43376800	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:43373600-43376600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:43373600-43376800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr3:43373600-43377000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr3:43373600-43377000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr3:43373600-43377000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr3:43373600-43377200	Strong transcription	Liver	Liver
49	chr3:43373800-43377000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:43373800-43377200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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