Variant report

Variant	rs61676031
Chromosome Location	chr3:43395303-43395304
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43395114-43396768	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr3:43395011-43396918	HUVEC	blood vessel:	n/a	n/a
3	SETDB1	chr3:43394996-43395321	U2OS	brain:	n/a	n/a
4	KAP1	chr3:43394740-43395372	K562	blood:	n/a	n/a
5	POLR2A	chr3:43395206-43396682	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr3:43394957-43396955	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43390162..43392791-chr3:43393918..43397440,3	K562	blood:
2	chr3:43388465..43391371-chr3:43394081..43396084,2	MCF-7	breast:

Variant related genes	Relation type
SNRK-AS1	TF binding region
ENSG00000271941	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510734	1.00[EUR][1000 genomes]
rs1105263	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17075523	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17075612	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1848069	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60173579	1.00[EUR][1000 genomes]
rs60410086	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6441770	1.00[EUR][1000 genomes]
rs6763493	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862031	1.00[EUR][1000 genomes]
rs72862060	1.00[EUR][1000 genomes]
rs72863608	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863615	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863618	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863622	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72863647	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72863656	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73831272	1.00[EUR][1000 genomes]
rs7613430	1.00[EUR][1000 genomes]
rs7623284	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
2	chr3:43382400-43395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:43385200-43396800	Weak transcription	Ovary	ovary
4	chr3:43385800-43402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:43387600-43402600	Weak transcription	Right Atrium	heart
6	chr3:43389200-43400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:43390600-43403600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr3:43390600-43407200	Weak transcription	Gastric	stomach
10	chr3:43390800-43402200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:43390800-43405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:43391400-43405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:43391600-43396000	Weak transcription	Spleen	Spleen
14	chr3:43391600-43402000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:43391600-43404200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
17	chr3:43392200-43395800	Weak transcription	HepG2	liver
18	chr3:43392200-43396600	Weak transcription	HSMMtube	muscle
19	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr3:43392400-43396400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:43392600-43397000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:43392800-43395400	Weak transcription	Placenta	Placenta
23	chr3:43392800-43395600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr3:43392800-43402200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:43393000-43395600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:43393000-43396000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr3:43393000-43402000	Weak transcription	Left Ventricle	heart
28	chr3:43393000-43405000	Weak transcription	Pancreas	Pancrea
29	chr3:43393200-43395600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:43393200-43396000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
31	chr3:43393200-43396000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:43393200-43396200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
33	chr3:43393400-43396600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
34	chr3:43393400-43402200	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr3:43394000-43396000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
36	chr3:43394400-43395600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:43394600-43395400	Weak transcription	HSMM	muscle
38	chr3:43395000-43395600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:43395000-43396200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
40	chr3:43395000-43396400	ZNF genes & repeats	Primary T cells from cord blood	blood
41	chr3:43395000-43396600	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr3:43395000-43396600	Enhancers	Liver	Liver
43	chr3:43395200-43395600	ZNF genes & repeats	Fetal Muscle Leg	muscle
44	chr3:43395200-43395600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
45	chr3:43395200-43395800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
46	chr3:43395200-43395800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr3:43395200-43396000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:43395200-43396000	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr3:43395200-43396200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr3:43395200-43396200	ZNF genes & repeats	Fetal Muscle Trunk	muscle

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