The 2.0 version of rSNPBase

Variant report

Variant rs17082586
Chromosome Location chr4:54178726-54178727
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:54140200-54179000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr4:54168200-54188000 Weak transcription Left Ventricle heart
3 chr4:54169200-54180000 Weak transcription Brain Hippocampus Middle brain
4 chr4:54169200-54187800 Weak transcription Liver Liver
5 chr4:54169400-54187400 Weak transcription Dnd41 blood
6 chr4:54169600-54187800 Weak transcription Brain Angular Gyrus brain
7 chr4:54169800-54181400 Weak transcription Fetal Lung lung
8 chr4:54169800-54181400 Weak transcription Sigmoid Colon Sigmoid Colon
9 chr4:54169800-54187800 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr4:54169800-54216200 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr4:54170000-54181400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
12 chr4:54170000-54183800 Weak transcription Primary B cells from peripheral blood blood
13 chr4:54170000-54186800 Weak transcription HSMM muscle
14 chr4:54170600-54187600 Weak transcription K562 blood
15 chr4:54170600-54230600 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr4:54170800-54181400 Weak transcription Fetal Thymus thymus
17 chr4:54171200-54179200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr4:54171200-54188000 Weak transcription Esophagus oesophagus
19 chr4:54171600-54181200 Weak transcription Duodenum Mucosa Duodenum
20 chr4:54171600-54181400 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr4:54171600-54181400 Weak transcription Primary T killer naive cells fromperipheralblood blood
22 chr4:54171600-54187600 Weak transcription Primary monocytes fromperipheralblood blood
23 chr4:54171800-54181400 Weak transcription Brain Cingulate Gyrus brain
24 chr4:54172000-54181200 Weak transcription Fetal Intestine Small intestine
25 chr4:54172000-54188000 Weak transcription Pancreas Pancrea
26 chr4:54172000-54188000 Weak transcription HepG2 liver
27 chr4:54172200-54180800 Weak transcription Primary T regulatory cells fromperipheralblood blood
28 chr4:54172200-54181800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr4:54172600-54215400 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr4:54173000-54187600 Weak transcription Brain Anterior Caudate brain
31 chr4:54173200-54182000 Weak transcription Primary T helper naive cells fromperipheralblood blood
32 chr4:54173400-54181400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr4:54173400-54186800 Weak transcription NH-A brain
34 chr4:54173600-54182200 Weak transcription Skeletal Muscle Male skeletal muscle
35 chr4:54173800-54181800 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr4:54174200-54181400 Weak transcription Primary T cells from cord blood blood
37 chr4:54174200-54187200 Weak transcription Adipose Nuclei Adipose
38 chr4:54174200-54187400 Weak transcription A549 lung
39 chr4:54174200-54212600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
40 chr4:54174600-54179800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr4:54174800-54181600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
42 chr4:54174800-54187400 Weak transcription Primary hematopoietic stem cells blood
43 chr4:54175200-54181400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr4:54175800-54188000 Weak transcription Ovary ovary
45 chr4:54176400-54179600 Weak transcription Aorta Aorta
46 chr4:54176400-54180600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr4:54176400-54186200 Weak transcription Muscle Satellite Cultured Cells --
48 chr4:54176400-54186200 Weak transcription NHLF lung
49 chr4:54176400-54187400 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr4:54176600-54181600 Weak transcription Fetal Brain Male brain

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Last update: Aug 31, 2015