Variant report

Variant	rs73149233
Chromosome Location	chr4:54153872-54153873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11932451	1.00[EUR][1000 genomes]
rs11934255	1.00[EUR][1000 genomes]
rs17082514	1.00[EUR][1000 genomes]
rs17082527	1.00[EUR][1000 genomes]
rs17082568	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17082586	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28824263	1.00[EUR][1000 genomes]
rs56720104	1.00[EUR][1000 genomes]
rs56919722	1.00[EUR][1000 genomes]
rs57159957	1.00[EUR][1000 genomes]
rs57480314	1.00[EUR][1000 genomes]
rs59315527	1.00[EUR][1000 genomes]
rs59382030	1.00[EUR][1000 genomes]
rs59688893	1.00[EUR][1000 genomes]
rs60129843	1.00[EUR][1000 genomes]
rs60298480	1.00[EUR][1000 genomes]
rs60960188	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61451961	1.00[EUR][1000 genomes]
rs73141473	1.00[EUR][1000 genomes]
rs73141488	1.00[EUR][1000 genomes]
rs73141489	1.00[EUR][1000 genomes]
rs73141493	1.00[EUR][1000 genomes]
rs73141502	1.00[EUR][1000 genomes]
rs73143406	1.00[EUR][1000 genomes]
rs73143409	1.00[EUR][1000 genomes]
rs73143437	1.00[EUR][1000 genomes]
rs73143440	1.00[EUR][1000 genomes]
rs73143445	1.00[EUR][1000 genomes]
rs73143454	1.00[EUR][1000 genomes]
rs73143469	1.00[EUR][1000 genomes]
rs73143473	1.00[EUR][1000 genomes]
rs73143478	1.00[EUR][1000 genomes]
rs73143501	1.00[EUR][1000 genomes]
rs73145365	1.00[EUR][1000 genomes]
rs73145375	1.00[EUR][1000 genomes]
rs73147304	1.00[EUR][1000 genomes]
rs73147395	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73147399	1.00[EUR][1000 genomes]
rs73147402	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73149225	0.95[AFR][1000 genomes]
rs73149226	1.00[EUR][1000 genomes]
rs73149238	1.00[EUR][1000 genomes]
rs73149250	1.00[EUR][1000 genomes]
rs73149260	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73149274	1.00[EUR][1000 genomes]
rs73151252	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7660092	1.00[EUR][1000 genomes]
rs7661029	1.00[EUR][1000 genomes]
rs7676883	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54129600-54154600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr4:54134800-54154200	Weak transcription	NHLF	lung
3	chr4:54135200-54154600	Weak transcription	Primary T cells from cord blood	blood
4	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:54141000-54155800	Weak transcription	Pancreas	Pancrea
6	chr4:54152200-54154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:54153200-54164200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:54153200-54172200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:54153800-54156800	Weak transcription	Primary B cells from cord blood	blood

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