Variant report

Variant	rs60298480
Chromosome Location	chr4:54113472-54113473
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11932451	1.00[EUR][1000 genomes]
rs11934255	1.00[EUR][1000 genomes]
rs17082361	1.00[EUR][1000 genomes]
rs17082514	1.00[EUR][1000 genomes]
rs17082527	1.00[EUR][1000 genomes]
rs17082568	1.00[EUR][1000 genomes]
rs17082586	1.00[EUR][1000 genomes]
rs28824263	1.00[EUR][1000 genomes]
rs56720104	1.00[EUR][1000 genomes]
rs56919722	1.00[EUR][1000 genomes]
rs57159957	1.00[EUR][1000 genomes]
rs57480314	1.00[EUR][1000 genomes]
rs59315527	1.00[EUR][1000 genomes]
rs59382030	1.00[EUR][1000 genomes]
rs59688893	1.00[EUR][1000 genomes]
rs60129843	1.00[EUR][1000 genomes]
rs60960188	1.00[EUR][1000 genomes]
rs61451961	1.00[EUR][1000 genomes]
rs73141465	1.00[EUR][1000 genomes]
rs73141473	1.00[EUR][1000 genomes]
rs73141488	1.00[EUR][1000 genomes]
rs73141489	1.00[EUR][1000 genomes]
rs73141493	1.00[EUR][1000 genomes]
rs73141502	1.00[EUR][1000 genomes]
rs73143406	1.00[EUR][1000 genomes]
rs73143409	1.00[EUR][1000 genomes]
rs73143437	1.00[EUR][1000 genomes]
rs73143440	1.00[EUR][1000 genomes]
rs73143445	1.00[EUR][1000 genomes]
rs73143454	1.00[EUR][1000 genomes]
rs73143469	1.00[EUR][1000 genomes]
rs73143473	1.00[EUR][1000 genomes]
rs73143478	1.00[EUR][1000 genomes]
rs73143501	1.00[EUR][1000 genomes]
rs73145365	1.00[EUR][1000 genomes]
rs73145375	1.00[EUR][1000 genomes]
rs73147304	1.00[EUR][1000 genomes]
rs73147395	1.00[EUR][1000 genomes]
rs73147399	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73147402	1.00[EUR][1000 genomes]
rs73149226	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73149233	1.00[EUR][1000 genomes]
rs73149238	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73149250	1.00[EUR][1000 genomes]
rs73149260	1.00[EUR][1000 genomes]
rs73149274	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73151252	1.00[EUR][1000 genomes]
rs7660092	1.00[EUR][1000 genomes]
rs7661029	1.00[EUR][1000 genomes]
rs7676883	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879013	chr4:54093717-54137228	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54101600-54129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:54106600-54120000	Weak transcription	Gastric	stomach
3	chr4:54108000-54114000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:54108200-54114200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:54108400-54114200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:54108400-54114200	Weak transcription	Pancreas	Pancrea
7	chr4:54108400-54129600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:54111400-54114400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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