The 2.0 version of rSNPBase

Variant report

Variant rs57159957
Chromosome Location chr4:54019198-54019199
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:53993800-54027800 Weak transcription Fetal Stomach stomach
2 chr4:53997400-54020000 Weak transcription HSMM muscle
3 chr4:53999000-54027800 Weak transcription NHDF-Ad bronchial
4 chr4:54004200-54020800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr4:54004200-54052200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr4:54005600-54023600 Weak transcription Primary T killer naive cells fromperipheralblood blood
7 chr4:54007200-54030600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
8 chr4:54009600-54024000 Weak transcription Brain Inferior Temporal Lobe brain
9 chr4:54010200-54034600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr4:54011400-54027800 Weak transcription Aorta Aorta
11 chr4:54011600-54021000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr4:54011600-54021000 Weak transcription Primary B cells from cord blood blood
13 chr4:54011600-54021400 Weak transcription Primary hematopoietic stem cells blood
14 chr4:54011600-54022600 Weak transcription Monocytes-CD14+_RO01746 blood
15 chr4:54011600-54027200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr4:54011600-54027800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr4:54011600-54029200 Weak transcription Fetal Muscle Trunk muscle
18 chr4:54011600-54030600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr4:54011600-54052200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr4:54011800-54019200 Weak transcription Primary hematopoietic stem cells short term culture blood
21 chr4:54011800-54019200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr4:54011800-54021000 Weak transcription Primary T cells from cord blood blood
23 chr4:54011800-54023400 Weak transcription Primary T cells fromperipheralblood blood
24 chr4:54011800-54025800 Weak transcription Primary T helper cells fromperipheralblood blood
25 chr4:54011800-54026600 Weak transcription Left Ventricle heart
26 chr4:54011800-54031600 Weak transcription Pancreas Pancrea
27 chr4:54017600-54019200 Weak transcription Dnd41 blood
28 chr4:54017800-54019400 Weak transcription Right Ventricle heart
29 chr4:54018000-54023400 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr4:54018000-54028000 Weak transcription Psoas Muscle Psoas
31 chr4:54018000-54028200 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr4:54018000-54035800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr4:54018200-54019400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr4:54018200-54027400 Weak transcription Liver Liver
35 chr4:54018800-54019400 Enhancers Sigmoid Colon Sigmoid Colon
36 chr4:54019000-54019400 ZNF genes & repeats Lung lung
37 chr4:54019000-54019600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
38 chr4:54019000-54019600 ZNF genes & repeats Fetal Intestine Small intestine
39 chr4:54019000-54019600 ZNF genes & repeats GM12878-XiMat blood

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Last update: Aug 31, 2015