Variant report

Variant	rs73149226
Chromosome Location	chr4:54149656-54149657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:54149656..54152497-chr4:54155266..54158349,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11932451	1.00[EUR][1000 genomes]
rs11934255	1.00[EUR][1000 genomes]
rs17082514	1.00[EUR][1000 genomes]
rs17082527	1.00[EUR][1000 genomes]
rs17082568	1.00[EUR][1000 genomes]
rs17082586	1.00[EUR][1000 genomes]
rs28824263	1.00[EUR][1000 genomes]
rs56720104	1.00[EUR][1000 genomes]
rs56919722	1.00[EUR][1000 genomes]
rs57159957	1.00[EUR][1000 genomes]
rs57480314	1.00[EUR][1000 genomes]
rs59315527	1.00[EUR][1000 genomes]
rs59382030	1.00[EUR][1000 genomes]
rs59688893	1.00[EUR][1000 genomes]
rs60129843	1.00[EUR][1000 genomes]
rs60298480	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60960188	1.00[EUR][1000 genomes]
rs61451961	1.00[EUR][1000 genomes]
rs73141473	1.00[EUR][1000 genomes]
rs73141488	1.00[EUR][1000 genomes]
rs73141489	1.00[EUR][1000 genomes]
rs73141493	1.00[EUR][1000 genomes]
rs73141502	1.00[EUR][1000 genomes]
rs73143406	1.00[EUR][1000 genomes]
rs73143409	1.00[EUR][1000 genomes]
rs73143437	1.00[EUR][1000 genomes]
rs73143440	1.00[EUR][1000 genomes]
rs73143445	1.00[EUR][1000 genomes]
rs73143454	1.00[EUR][1000 genomes]
rs73143469	1.00[EUR][1000 genomes]
rs73143473	1.00[EUR][1000 genomes]
rs73143478	1.00[EUR][1000 genomes]
rs73143501	1.00[EUR][1000 genomes]
rs73145365	1.00[EUR][1000 genomes]
rs73145375	1.00[EUR][1000 genomes]
rs73147304	1.00[EUR][1000 genomes]
rs73147395	1.00[EUR][1000 genomes]
rs73147399	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73147402	1.00[EUR][1000 genomes]
rs73149233	1.00[EUR][1000 genomes]
rs73149238	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73149250	1.00[EUR][1000 genomes]
rs73149260	1.00[EUR][1000 genomes]
rs73149274	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73151252	1.00[EUR][1000 genomes]
rs7660092	1.00[EUR][1000 genomes]
rs7661029	1.00[EUR][1000 genomes]
rs7676883	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1008593	chr4:54120297-54207769	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763360	chr4:54123894-54153814	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54127600-54153000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:54129600-54154600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:54130400-54150400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:54134800-54151000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:54134800-54154200	Weak transcription	NHLF	lung
6	chr4:54135000-54151200	Weak transcription	Left Ventricle	heart
7	chr4:54135200-54151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:54135200-54154600	Weak transcription	Primary T cells from cord blood	blood
9	chr4:54135400-54152200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:54135400-54153000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:54140200-54151000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:54140200-54179000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:54141000-54155800	Weak transcription	Pancreas	Pancrea
14	chr4:54146200-54153600	Weak transcription	Primary B cells from cord blood	blood
15	chr4:54148400-54151200	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links