Variant report

Variant	rs17090802
Chromosome Location	chr1:71547399-71547400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr1:71545092-71548064	SK-N-SH	brain:	n/a	chr1:71546259-71546268
2	RCOR1	chr1:71546143-71547621	K562	blood:	n/a	n/a
3	MAX	chr1:71547391-71547741	K562	blood:	n/a	n/a
4	POLR2A	chr1:71546401-71547773	GM12892	blood:	n/a	n/a
5	POLR2A	chr1:71545777-71547708	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr1:71545927-71547844	GM18505	blood:	n/a	n/a
7	POLR2A	chr1:71545866-71547791	K562	blood:	n/a	n/a
8	CTCF	chr1:71546575-71547455	IMR90	lung:	n/a	chr1:71546980-71546998
9	POLR2A	chr1:71545832-71547817	GM12891	blood:	n/a	n/a
10	RELA	chr1:71546455-71547467	GM19099	blood:	n/a	n/a
11	TBL1XR1	chr1:71546468-71547517	K562	blood:	n/a	n/a
12	MAX	chr1:71545794-71547480	GM12878	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
13	POLR2A	chr1:71546344-71547430	U87	brain:	n/a	n/a
14	PML	chr1:71546262-71547566	GM12878	blood:	n/a	n/a
15	POLR2A	chr1:71545890-71547819	K562	blood:	n/a	n/a
16	JUND	chr1:71546195-71547656	K562	blood:	n/a	chr1:71546317-71546331
17	POLR2A	chr1:71547342-71547702	ECC-1	luminal epithelium:	n/a	n/a
18	POLR2A	chr1:71546317-71547747	K562	blood:	n/a	n/a
19	EP300	chr1:71546553-71547690	K562	blood:	n/a	n/a
20	POLR2A	chr1:71547385-71547761	K562	blood:	n/a	n/a
21	ELF1	chr1:71546395-71547479	HCT-116	colon:	n/a	n/a
22	BATF	chr1:71547259-71547676	GM12878	blood:	n/a	n/a
23	CTCF	chr1:71546552-71547615	K562	blood:	n/a	chr1:71546980-71546998
24	CEBPB	chr1:71546485-71547656	GM12878	blood:	n/a	n/a
25	POLR2A	chr1:71546351-71547795	PBDE	blood:	n/a	n/a
26	POLR2A	chr1:71545944-71547814	K562	blood:	n/a	n/a
27	POLR2A	chr1:71545974-71547881	GM19099	blood:	n/a	n/a
28	MYC	chr1:71545800-71547775	K562	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
29	CTCF	chr1:71547380-71547530	NHLF	lung:	n/a	n/a
30	POLR2A	chr1:71545936-71547807	Raji	blood:	n/a	n/a
31	NFIC	chr1:71546321-71547546	GM12878	blood:	n/a	n/a
32	MYC	chr1:71545748-71547643	K562	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
33	CHD1	chr1:71545810-71547424	GM12878	blood:	n/a	n/a
34	TBL1XR1	chr1:71546499-71547471	GM12878	blood:	n/a	n/a
35	POLR2A	chr1:71546142-71547653	GM15510	blood:	n/a	n/a
36	POLR2A	chr1:71546477-71547400	HepG2	liver:	n/a	n/a
37	YY1	chr1:71547322-71547665	K562	blood:	n/a	n/a
38	POLR2A	chr1:71545942-71547668	GM18951	blood:	n/a	n/a
39	POLR2A	chr1:71546142-71547800	HepG2	liver:	n/a	n/a
40	MAFK	chr1:71546538-71547777	K562	blood:	n/a	n/a
41	NR2F2	chr1:71546330-71547568	K562	blood:	n/a	n/a
42	YY1	chr1:71547267-71547693	K562	blood:	n/a	n/a
43	KAP1	chr1:71547102-71547633	K562	blood:	n/a	n/a
44	MTA3	chr1:71546324-71547814	GM12878	blood:	n/a	n/a
45	ELF1	chr1:71546440-71547431	HCT-116	colon:	n/a	n/a
46	POLR2A	chr1:71546227-71547750	K562	blood:	n/a	n/a
47	ZBTB7A	chr1:71547320-71547718	K562	blood:	n/a	n/a
48	PML	chr1:71546327-71547635	K562	blood:	n/a	n/a
49	IRF1	chr1:71546614-71547564	K562	blood:	n/a	n/a
50	TAF1	chr1:71546327-71547791	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:71528704..71533041-chr1:71544796..71547832,3	MCF-7	breast:
2	chr1:71511577..71513859-chr1:71544920..71548466,4	K562	blood:
3	chr1:70709756..70712647-chr1:71546604..71549117,2	MCF-7	breast:
4	chr1:71545618..71549519-chr1:71556645..71559199,4	K562	blood:
5	chr1:71547078..71549094-chr1:71556895..71558894,2	K562	blood:

Variant related genes	Relation type
ZRANB2	TF binding region
ENSG00000050628	Chromatin interaction
ENSG00000116754	Chromatin interaction
ENSG00000229956	Chromatin interaction
ENSG00000132485	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10128001	0.80[CEU][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10493483	0.96[AMR][1000 genomes]
rs10518356	0.80[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11556475	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13376594	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17090808	0.80[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17090925	0.89[AMR][1000 genomes]
rs17090932	0.80[CEU][hapmap];0.96[AMR][1000 genomes]
rs17091001	0.96[AMR][1000 genomes]
rs17091015	0.93[AMR][1000 genomes]
rs17091024	0.96[AMR][1000 genomes]
rs17091028	0.93[AMR][1000 genomes]
rs2050066	0.81[EUR][1000 genomes]
rs41287936	0.97[EUR][1000 genomes]
rs5671	0.80[CEU][hapmap];0.97[EUR][1000 genomes]
rs5673	0.94[EUR][1000 genomes]
rs56752457	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5676	0.94[EUR][1000 genomes]
rs5691	0.94[EUR][1000 genomes]
rs58163483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58281678	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58293304	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59834169	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60078028	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs726352	0.96[AMR][1000 genomes]
rs74087222	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74090259	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7531741	0.95[EUR][1000 genomes]
rs7552415	0.89[CEU][hapmap];0.97[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71544400-71547400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:71544400-71547600	Active TSS	Rectal Smooth Muscle	rectum
3	chr1:71544600-71547600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:71544600-71547600	Active TSS	K562	blood
5	chr1:71544600-71547800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr1:71544600-71547800	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr1:71544800-71547400	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr1:71544800-71547400	Active TSS	Fetal Intestine Large	intestine
9	chr1:71544800-71547400	Active TSS	GM12878-XiMat	blood
10	chr1:71544800-71547600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:71544800-71547800	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr1:71544800-71547800	Active TSS	Colonic Mucosa	Colon
13	chr1:71544800-71547800	Active TSS	HMEC	breast
14	chr1:71545000-71547400	Active TSS	H1 Cell Line	embryonic stem cell
15	chr1:71545000-71547400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:71545000-71547400	Active TSS	Brain Germinal Matrix	brain
17	chr1:71545000-71547400	Active TSS	Fetal Brain Male	brain
18	chr1:71545000-71547400	Active TSS	Fetal Intestine Small	intestine
19	chr1:71545000-71547400	Active TSS	Fetal Stomach	stomach
20	chr1:71545000-71547400	Active TSS	Right Atrium	heart
21	chr1:71545000-71547400	Active TSS	Right Ventricle	heart
22	chr1:71545000-71547400	Active TSS	NHLF	lung
23	chr1:71545200-71547400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr1:71545200-71547400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:71545200-71547400	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr1:71545200-71547400	Active TSS	HSMMtube	muscle
27	chr1:71545200-71547400	Active TSS	NHEK	skin
28	chr1:71545200-71547600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr1:71545200-71547600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:71545200-71547600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:71545200-71547600	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr1:71545200-71547600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr1:71545200-71547800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:71545200-71547800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:71545200-71547800	Active TSS	Psoas Muscle	Psoas
36	chr1:71545200-71547800	Active TSS	A549	lung
37	chr1:71545200-71547800	Active TSS	Hela-S3	cervix
38	chr1:71545200-71547800	Active TSS	HSMM	muscle
39	chr1:71545400-71547400	Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr1:71545400-71547400	Active TSS	Aorta	Aorta
41	chr1:71545400-71547400	Active TSS	Fetal Muscle Leg	muscle
42	chr1:71545400-71547400	Active TSS	Ovary	ovary
43	chr1:71545400-71547400	Active TSS	Thymus	Thymus
44	chr1:71545400-71547400	Active TSS	NHDF-Ad	bronchial
45	chr1:71545400-71547600	Active TSS	iPS-18 Cell Line	embryonic stem cell
46	chr1:71545400-71547600	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr1:71545400-71547600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:71545600-71547400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr1:71545600-71547400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:71545600-71547400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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