Variant report
| Variant | rs726352 |
|---|---|
| Chromosome Location | chr1:71707011-71707012 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10128001 | 0.93[AMR][1000 genomes] |
| rs10493483 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10518356 | 0.96[AMR][1000 genomes] |
| rs11556475 | 0.92[AMR][1000 genomes] |
| rs13376594 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17090802 | 0.96[AMR][1000 genomes] |
| rs17090808 | 0.96[AMR][1000 genomes] |
| rs17090925 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17090932 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17091001 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17091015 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17091024 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17091028 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17485917 | 0.97[EUR][1000 genomes] |
| rs41287936 | 0.81[AMR][1000 genomes] |
| rs5671 | 0.82[AMR][1000 genomes] |
| rs56752457 | 0.90[AMR][1000 genomes] |
| rs58163483 | 0.96[AMR][1000 genomes] |
| rs58281678 | 0.92[AMR][1000 genomes] |
| rs58293304 | 0.92[AMR][1000 genomes] |
| rs59834169 | 0.89[AMR][1000 genomes] |
| rs60078028 | 0.92[AMR][1000 genomes] |
| rs74087222 | 0.93[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs74090259 | 0.89[AMR][1000 genomes] |
| rs7519263 | 1.00[EUR][1000 genomes] |
| rs7552415 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949599 | chr1:71655652-72327802 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005726 | chr1:71701840-71953242 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:71707000-71708000 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
