Variant report
| Variant | rs17090932 |
|---|---|
| Chromosome Location | chr1:71663686-71663687 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226324 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10128001 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes] |
| rs10493483 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10518356 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes] |
| rs11556475 | 0.92[AMR][1000 genomes] |
| rs13376594 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17090802 | 0.80[CEU][hapmap];0.96[AMR][1000 genomes] |
| rs17090808 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes] |
| rs17090925 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17091001 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17091015 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17091024 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17091028 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17485917 | 1.00[EUR][1000 genomes] |
| rs41287936 | 0.81[AMR][1000 genomes] |
| rs5671 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs56752457 | 0.90[AMR][1000 genomes] |
| rs58163483 | 0.96[AMR][1000 genomes] |
| rs58281678 | 0.92[AMR][1000 genomes] |
| rs58293304 | 0.92[AMR][1000 genomes] |
| rs59834169 | 0.89[AMR][1000 genomes] |
| rs60078028 | 0.92[AMR][1000 genomes] |
| rs726352 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs74087222 | 0.93[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs74090259 | 0.89[AMR][1000 genomes] |
| rs7519263 | 0.97[EUR][1000 genomes] |
| rs7552415 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv997782 | chr1:71628776-71668906 | Enhancers Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv949599 | chr1:71655652-72327802 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
