Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10128001	1.00[CEU][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes]
rs10493483	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10518356	1.00[CEU][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes]
rs11556475	0.86[AMR][1000 genomes]
rs13376594	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17090802	0.80[CEU][hapmap];0.89[AMR][1000 genomes]
rs17090808	1.00[CEU][hapmap];0.89[AMR][1000 genomes]
rs17090932	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17091001	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17091015	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17091024	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17091028	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17485917	1.00[EUR][1000 genomes]
rs5671	1.00[CEU][hapmap];0.86[TSI][hapmap]
rs56752457	0.83[AMR][1000 genomes]
rs5691	0.86[TSI][hapmap]
rs58163483	0.89[AMR][1000 genomes]
rs58281678	0.86[AMR][1000 genomes]
rs58293304	0.86[AMR][1000 genomes]
rs59834169	0.82[AMR][1000 genomes]
rs60078028	0.86[AMR][1000 genomes]
rs726352	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74087222	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74090259	0.82[AMR][1000 genomes]
rs7519263	0.97[EUR][1000 genomes]
rs7552415	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71659000-71659400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr1:71659000-71659400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:71659000-71663000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:71659200-71660000	Weak transcription	Ovary	ovary

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