Variant report

Variant	rs17485917
Chromosome Location	chr1:71672119-71672120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10128001	1.00[CEU][hapmap]
rs10493483	0.97[EUR][1000 genomes]
rs10518356	1.00[CEU][hapmap]
rs13376594	0.84[EUR][1000 genomes]
rs17090802	0.80[CEU][hapmap]
rs17090808	1.00[CEU][hapmap]
rs17090925	1.00[EUR][1000 genomes]
rs17090932	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17091001	0.97[EUR][1000 genomes]
rs17091015	0.97[EUR][1000 genomes]
rs17091024	0.97[EUR][1000 genomes]
rs17091028	0.97[EUR][1000 genomes]
rs5671	1.00[CEU][hapmap]
rs726352	0.97[EUR][1000 genomes]
rs74087222	0.84[EUR][1000 genomes]
rs7519263	0.97[EUR][1000 genomes]
rs7552415	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71665600-71672400	Weak transcription	Pancreas	Pancrea
2	chr1:71671800-71672200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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