Variant report
| Variant | rs17091015 |
|---|---|
| Chromosome Location | chr1:71702829-71702830 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:7)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CTH-6 | chr1:71702813-71702878 | ENSG00000229956 |
| 2 | lnc-CTH-6 | chr1:71702813-71703406 | ENSG00000229956 |
| 3 | lnc-CTH-6 | chr1:71702813-71702881 | ENSG00000229956 |
| 4 | lnc-CTH-6 | chr1:71702813-71702878 | ENSG00000229956.5 |
| 5 | lnc-CTH-6 | chr1:71702813-71703069 | ENSG00000229956.5 |
| 6 | lnc-CTH-6 | chr1:71702813-71703799 | NONHSAT003893 |
| 7 | lnc-CTH-6 | chr1:71702813-71702878 | ENSG00000229956.5 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10128001 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes] |
| rs10493483 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10518356 | 1.00[CEU][hapmap];0.81[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs11556475 | 0.96[AMR][1000 genomes] |
| rs13376594 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17090802 | 0.80[CEU][hapmap];0.93[AMR][1000 genomes] |
| rs17090808 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes] |
| rs17090925 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17090932 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs17091001 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17091024 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17091028 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17485917 | 0.97[EUR][1000 genomes] |
| rs41287936 | 0.84[AMR][1000 genomes] |
| rs5671 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes] |
| rs56752457 | 0.86[AMR][1000 genomes] |
| rs58163483 | 0.93[AMR][1000 genomes] |
| rs58281678 | 0.96[AMR][1000 genomes] |
| rs58293304 | 0.96[AMR][1000 genomes] |
| rs59834169 | 0.93[AMR][1000 genomes] |
| rs60078028 | 0.96[AMR][1000 genomes] |
| rs726352 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74087222 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs74090259 | 0.93[AMR][1000 genomes] |
| rs7519263 | 1.00[EUR][1000 genomes] |
| rs7531741 | 0.81[AMR][1000 genomes] |
| rs7552415 | 1.00[CEU][hapmap];0.84[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949599 | chr1:71655652-72327802 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005726 | chr1:71701840-71953242 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:71702800-71703000 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
