Variant report

Variant	rs13376594
Chromosome Location	chr1:71628776-71628777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10128001	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10493483	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10518356	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11556475	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17090802	0.80[CEU][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17090808	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17090925	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17090932	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17091001	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17091015	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17091024	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17091028	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17485917	0.84[EUR][1000 genomes]
rs2050066	1.00[TSI][hapmap]
rs41287936	0.82[EUR][1000 genomes]
rs5671	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs5673	0.82[EUR][1000 genomes]
rs56752457	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5676	0.82[EUR][1000 genomes]
rs5691	1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs58163483	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58281678	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58293304	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59834169	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60078028	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs726352	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74087222	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090259	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7519263	0.81[EUR][1000 genomes]
rs7531741	0.84[EUR][1000 genomes]
rs7552415	1.00[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521769	chr1:71578442-71633719	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3362305	chr1:71594980-71631787	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv818211	chr1:71603703-71633719	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71625400-71637800	Weak transcription	Pancreas	Pancrea

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