Variant report

Variant rs17500089
Chromosome Location chr1:225649539-225649540
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:90 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225636200-225650000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:225642400-225650800 Weak transcription Right Atrium heart
3 chr1:225642400-225653000 Weak transcription Primary B cells from cord blood blood
4 chr1:225642400-225655200 Weak transcription Small Intestine intestine
5 chr1:225642600-225655000 Weak transcription Brain Hippocampus Middle brain
6 chr1:225642800-225650000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr1:225642800-225652800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
8 chr1:225643000-225650400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr1:225643000-225651000 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:225646400-225653600 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:225647000-225651600 Enhancers Primary T killer naive cells fromperipheralblood blood
12 chr1:225647000-225651600 Enhancers Fetal Muscle Leg muscle
13 chr1:225647000-225653600 Enhancers Esophagus oesophagus
14 chr1:225647000-225654600 Enhancers Fetal Thymus thymus
15 chr1:225647000-225654800 Enhancers Primary Natural Killer cells fromperipheralblood blood
16 chr1:225647200-225649600 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:225647200-225649800 Enhancers Thymus Thymus
18 chr1:225647200-225651600 Enhancers Fetal Adrenal Gland Adrenal Gland
19 chr1:225647400-225651200 Flanking Active TSS Stomach Smooth Muscle stomach
20 chr1:225647400-225654800 Enhancers Primary T cells fromperipheralblood blood
21 chr1:225647600-225649600 Enhancers Duodenum Mucosa Duodenum
22 chr1:225647600-225650200 Enhancers Spleen Spleen
23 chr1:225647600-225650200 Enhancers A549 lung
24 chr1:225647600-225652000 Enhancers Fetal Stomach stomach
25 chr1:225647600-225653800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
26 chr1:225647800-225649600 Enhancers Breast Myoepithelial Primary Cells Breast
27 chr1:225647800-225649600 Enhancers Primary T helper cells fromperipheralblood blood
28 chr1:225647800-225649800 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
29 chr1:225647800-225649800 Enhancers Primary T helper cells PMA-I stimulated --
30 chr1:225647800-225650200 Enhancers Primary T killer memory cells from peripheral blood blood
31 chr1:225647800-225653400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr1:225648000-225649600 Enhancers Primary T helper naive cells from peripheral blood blood
33 chr1:225648000-225649600 Enhancers Primary T regulatory cells fromperipheralblood blood
34 chr1:225648000-225649800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
35 chr1:225648000-225650200 Flanking Active TSS Rectal Smooth Muscle rectum
36 chr1:225648000-225651400 Enhancers Fetal Brain Male brain
37 chr1:225648000-225652600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
38 chr1:225648200-225649800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
39 chr1:225648200-225651000 Weak transcription Fetal Intestine Small intestine
40 chr1:225648400-225649800 Enhancers Primary mononuclear cells fromperipheralblood Blood
41 chr1:225648400-225650200 Enhancers Brain Germinal Matrix brain
42 chr1:225648400-225653400 Weak transcription Fetal Intestine Large intestine
43 chr1:225648600-225650800 Weak transcription Sigmoid Colon Sigmoid Colon
44 chr1:225648600-225651000 Weak transcription Gastric stomach
45 chr1:225648600-225651200 Enhancers Fetal Brain Female brain
46 chr1:225648600-225652800 Weak transcription Fetal Kidney kidney
47 chr1:225648800-225649600 Enhancers H1 Cell Line embryonic stem cell
48 chr1:225648800-225649600 Bivalent Enhancer Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr1:225648800-225649800 Enhancers Pancreas Pancrea
50 chr1:225648800-225650000 Weak transcription Cortex derived primary cultured neurospheres brain

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