The 2.0 version of rSNPBase

Variant report

Variant rs17502075
Chromosome Location chr1:225742304-225742305
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225701400-225744400 Weak transcription HUVEC blood vessel
2 chr1:225701400-225747000 Weak transcription Hela-S3 cervix
3 chr1:225705600-225747400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
4 chr1:225707200-225755000 Weak transcription Gastric stomach
5 chr1:225717600-225744400 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr1:225717800-225744400 Weak transcription Fetal Muscle Trunk muscle
7 chr1:225717800-225745000 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:225717800-225747400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr1:225717800-225747400 Weak transcription Fetal Stomach stomach
10 chr1:225717800-225758200 Weak transcription HepG2 liver
11 chr1:225718400-225756400 Weak transcription NHLF lung
12 chr1:225722800-225747600 Weak transcription Fetal Intestine Small intestine
13 chr1:225726800-225744000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr1:225727400-225744400 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr1:225727400-225747600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr1:225727400-225747600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr1:225727600-225753600 Weak transcription NHEK skin
18 chr1:225728000-225753400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr1:225730000-225744400 Weak transcription Fetal Muscle Leg muscle
20 chr1:225730200-225747600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr1:225730200-225753400 Weak transcription NHDF-Ad bronchial
22 chr1:225730200-225753600 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr1:225730400-225744000 Weak transcription ES-I3 Cell Line embryonic stem cell
24 chr1:225730600-225747600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr1:225730600-225765800 Weak transcription H9 Cell Line embryonic stem cell
26 chr1:225730600-225776200 Weak transcription Pancreas Pancrea
27 chr1:225732000-225744400 Weak transcription H1 Cell Line embryonic stem cell
28 chr1:225732000-225744600 Weak transcription Fetal Intestine Large intestine
29 chr1:225732400-225763000 Weak transcription Rectal Smooth Muscle rectum
30 chr1:225733000-225744400 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr1:225733600-225744000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:225734000-225744400 Weak transcription Brain Angular Gyrus brain
33 chr1:225734400-225744400 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr1:225734600-225763600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
35 chr1:225735200-225744400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
36 chr1:225735400-225746000 Strong transcription HUES48 Cell Line embryonic stem cell
37 chr1:225735800-225744000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
38 chr1:225735800-225744400 Weak transcription A549 lung
39 chr1:225736600-225744400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:225736600-225753400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:225736600-225756200 Weak transcription HSMMtube muscle
42 chr1:225736800-225744200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:225737000-225744400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
44 chr1:225737200-225744000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:225737800-225742600 Weak transcription Left Ventricle heart
46 chr1:225737800-225756400 Weak transcription Right Ventricle heart
47 chr1:225738000-225744400 Weak transcription Brain Hippocampus Middle brain
48 chr1:225738000-225747200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
49 chr1:225738000-225753600 Weak transcription Aorta Aorta
50 chr1:225738000-225753600 Weak transcription Ovary ovary

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Last update: Aug 31, 2015