The 2.0 version of rSNPBase

Variant report

Variant rs17569194
Chromosome Location chr1:225831670-225831671
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:79 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225809800-225837800 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr1:225813600-225837600 Weak transcription HUVEC blood vessel
3 chr1:225813800-225838600 Weak transcription HMEC breast
4 chr1:225814600-225835800 Weak transcription HSMMtube muscle
5 chr1:225815800-225839000 Weak transcription Fetal Intestine Large intestine
6 chr1:225816000-225832400 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr1:225816000-225834200 Weak transcription Fetal Adrenal Gland Adrenal Gland
8 chr1:225816000-225838400 Weak transcription H9 Cell Line embryonic stem cell
9 chr1:225816000-225838600 Weak transcription Fetal Kidney kidney
10 chr1:225816200-225835400 Weak transcription Fetal Heart heart
11 chr1:225816200-225836000 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr1:225816200-225836600 Weak transcription Adipose Nuclei Adipose
13 chr1:225816800-225832000 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:225817200-225834000 Weak transcription Psoas Muscle Psoas
15 chr1:225819000-225832200 Weak transcription NHDF-Ad bronchial
16 chr1:225819600-225836400 Weak transcription Brain Angular Gyrus brain
17 chr1:225820000-225835800 Weak transcription Brain Anterior Caudate brain
18 chr1:225820800-225837200 Weak transcription H1 Cell Line embryonic stem cell
19 chr1:225823600-225834200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr1:225823800-225835400 Weak transcription Brain Hippocampus Middle brain
21 chr1:225823800-225836600 Weak transcription NHLF lung
22 chr1:225824000-225832200 Weak transcription Colon Smooth Muscle Colon
23 chr1:225824200-225834400 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:225825000-225837400 Weak transcription Hela-S3 cervix
25 chr1:225825600-225839600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr1:225825800-225837200 Weak transcription NHEK skin
27 chr1:225826200-225838800 Weak transcription Fetal Intestine Small intestine
28 chr1:225826200-225839400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
29 chr1:225826800-225833600 Strong transcription iPS-20b Cell Line embryonic stem cell
30 chr1:225827400-225834000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:225827600-225832800 Strong transcription HUES6 Cell Line embryonic stem cell
32 chr1:225827800-225832400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:225827800-225836000 Weak transcription ES-I3 Cell Line embryonic stem cell
34 chr1:225828200-225832400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
35 chr1:225828200-225832600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr1:225828200-225833400 Strong transcription HUES64 Cell Line embryonic stem cell
37 chr1:225828200-225835400 Weak transcription HepG2 liver
38 chr1:225828400-225832800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:225828600-225832800 Weak transcription Brain Germinal Matrix brain
40 chr1:225828600-225836200 Weak transcription Right Atrium heart
41 chr1:225828800-225833200 Strong transcription Fetal Lung lung
42 chr1:225830200-225832200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr1:225830200-225832400 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
44 chr1:225830200-225834000 Weak transcription Left Ventricle heart
45 chr1:225830200-225836600 Weak transcription Stomach Smooth Muscle stomach
46 chr1:225830200-225838800 Weak transcription ES-WA7 Cell Line embryonic stem cell
47 chr1:225830400-225831800 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr1:225830400-225832600 Weak transcription Fetal Muscle Trunk muscle
49 chr1:225830400-225834000 Weak transcription Ovary ovary
50 chr1:225830400-225835800 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015