The 2.0 version of rSNPBase

Variant report

Variant rs1832229
Chromosome Location chr1:225698614-225698615
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225677200-225703600 Weak transcription Fetal Brain Female brain
2 chr1:225681800-225699800 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:225686800-225699800 Weak transcription Adipose Nuclei Adipose
4 chr1:225687000-225705000 Weak transcription Spleen Spleen
5 chr1:225687400-225704400 Weak transcription Fetal Stomach stomach
6 chr1:225688600-225704600 Weak transcription Placenta Placenta
7 chr1:225688800-225711400 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:225689200-225721000 Weak transcription Duodenum Mucosa Duodenum
9 chr1:225691000-225706200 Weak transcription Primary B cells from cord blood blood
10 chr1:225691200-225705000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr1:225692600-225704800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr1:225693200-225702800 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr1:225695000-225699200 Weak transcription Liver Liver
14 chr1:225695400-225704800 Weak transcription Fetal Brain Male brain
15 chr1:225695600-225721200 Weak transcription Fetal Kidney kidney
16 chr1:225696600-225701800 Strong transcription Fetal Muscle Trunk muscle
17 chr1:225696600-225705000 Weak transcription Gastric stomach
18 chr1:225696800-225698800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:225696800-225699200 Weak transcription Fetal Intestine Large intestine
20 chr1:225696800-225704800 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr1:225697000-225699600 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr1:225697000-225701200 Strong transcription Fetal Lung lung
23 chr1:225697000-225701200 Weak transcription HepG2 liver
24 chr1:225697200-225699600 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:225697200-225699600 Weak transcription Fetal Muscle Leg muscle
26 chr1:225697200-225699600 Weak transcription Left Ventricle heart
27 chr1:225697200-225699800 Weak transcription HSMMtube muscle
28 chr1:225697200-225701400 Weak transcription Fetal Intestine Small intestine
29 chr1:225697200-225703400 Weak transcription Ovary ovary
30 chr1:225697200-225704800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr1:225697200-225704800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr1:225697200-225704800 Weak transcription Pancreas Pancrea
33 chr1:225697200-225705000 Weak transcription Esophagus oesophagus
34 chr1:225697200-225705000 Weak transcription Lung lung
35 chr1:225697200-225705400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr1:225697200-225711200 Weak transcription Fetal Heart heart
37 chr1:225697200-225716600 Weak transcription Right Atrium heart
38 chr1:225697400-225698800 Weak transcription Cortex derived primary cultured neurospheres brain
39 chr1:225697400-225699200 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr1:225697400-225699200 Weak transcription Stomach Smooth Muscle stomach
41 chr1:225697400-225699400 Weak transcription Brain Germinal Matrix brain
42 chr1:225697400-225699400 Weak transcription Skeletal Muscle Female skeletal muscle
43 chr1:225697400-225700000 Weak transcription Colon Smooth Muscle Colon
44 chr1:225697400-225701400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr1:225697400-225705000 Weak transcription Aorta Aorta
46 chr1:225697400-225705000 Weak transcription Right Ventricle heart
47 chr1:225697400-225715400 Weak transcription Rectal Smooth Muscle rectum
48 chr1:225697400-225722600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
49 chr1:225697600-225702200 Weak transcription Stomach Mucosa stomach
50 chr1:225697600-225703400 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015