The 2.0 version of rSNPBase

Variant report

Variant rs1876086
Chromosome Location chr1:225755208-225755209
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:225717800-225758200 Weak transcription HepG2 liver
2 chr1:225718400-225756400 Weak transcription NHLF lung
3 chr1:225730600-225765800 Weak transcription H9 Cell Line embryonic stem cell
4 chr1:225730600-225776200 Weak transcription Pancreas Pancrea
5 chr1:225732400-225763000 Weak transcription Rectal Smooth Muscle rectum
6 chr1:225734600-225763600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
7 chr1:225736600-225756200 Weak transcription HSMMtube muscle
8 chr1:225737800-225756400 Weak transcription Right Ventricle heart
9 chr1:225738600-225758000 Weak transcription Brain Germinal Matrix brain
10 chr1:225741800-225758600 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:225744800-225759400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:225744800-225760200 Weak transcription Brain Hippocampus Middle brain
13 chr1:225744800-225761400 Weak transcription Brain Angular Gyrus brain
14 chr1:225744800-225768200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr1:225744800-225768600 Weak transcription Fetal Brain Male brain
16 chr1:225745000-225760800 Weak transcription Fetal Kidney kidney
17 chr1:225745000-225770000 Weak transcription HUVEC blood vessel
18 chr1:225745000-225772800 Weak transcription Fetal Brain Female brain
19 chr1:225745400-225755800 Weak transcription Fetal Intestine Large intestine
20 chr1:225746200-225756200 Weak transcription Fetal Heart heart
21 chr1:225746600-225755600 Strong transcription HUES64 Cell Line embryonic stem cell
22 chr1:225746600-225756400 Weak transcription Brain Inferior Temporal Lobe brain
23 chr1:225747200-225759800 Weak transcription Brain Substantia Nigra brain
24 chr1:225747800-225755400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr1:225747800-225755800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
26 chr1:225747800-225756400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr1:225747800-225765000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr1:225748400-225759800 Weak transcription Brain Anterior Caudate brain
29 chr1:225748600-225756200 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr1:225748800-225765800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr1:225748800-225799400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr1:225749200-225783800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:225749400-225755400 Strong transcription HUES48 Cell Line embryonic stem cell
34 chr1:225750000-225758000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
35 chr1:225750800-225761200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr1:225751800-225759800 Weak transcription Brain Cingulate Gyrus brain
37 chr1:225752200-225758800 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr1:225753600-225755400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:225753600-225755400 Strong transcription HSMM muscle
40 chr1:225753600-225758000 Weak transcription Fetal Intestine Small intestine
41 chr1:225753600-225758800 Weak transcription Lung lung
42 chr1:225753800-225759200 Weak transcription Psoas Muscle Psoas
43 chr1:225754000-225759600 Weak transcription iPS-15b Cell Line embryonic stem cell
44 chr1:225754000-225764600 Weak transcription Fetal Stomach stomach
45 chr1:225754200-225755400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr1:225754200-225755600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:225754200-225756400 Weak transcription Colon Smooth Muscle Colon
48 chr1:225754200-225756400 Weak transcription A549 lung
49 chr1:225754200-225756600 Weak transcription NHEK skin
50 chr1:225754200-225757800 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015