Variant report
Variant | rs1796825 |
---|---|
Chromosome Location | chr1:76390761-76390762 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:76380506..76383484-chr1:76388793..76390855,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10127768 | 1.00[EUR][1000 genomes] |
rs1021463 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10493581 | 1.00[EUR][1000 genomes] |
rs1068884 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10747330 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs10873726 | 1.00[EUR][1000 genomes] |
rs10873786 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11161785 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs11161801 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1144330 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1144332 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1144335 | 1.00[EUR][1000 genomes] |
rs1146575 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1146576 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1146578 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1146585 | 1.00[EUR][1000 genomes] |
rs1146586 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1146589 | 1.00[EUR][1000 genomes] |
rs1146595 | 1.00[EUR][1000 genomes] |
rs1146596 | 1.00[EUR][1000 genomes] |
rs1146597 | 1.00[EUR][1000 genomes] |
rs1146599 | 1.00[EUR][1000 genomes] |
rs1146600 | 1.00[EUR][1000 genomes] |
rs1146601 | 1.00[EUR][1000 genomes] |
rs1146604 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1146621 | 1.00[EUR][1000 genomes] |
rs1146633 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1146640 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12401785 | 1.00[EUR][1000 genomes] |
rs1250879 | 1.00[EUR][1000 genomes] |
rs1251066 | 1.00[EUR][1000 genomes] |
rs1251074 | 1.00[EUR][1000 genomes] |
rs1251271 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1251499 | 1.00[EUR][1000 genomes] |
rs1251532 | 1.00[EUR][1000 genomes] |
rs1251538 | 1.00[EUR][1000 genomes] |
rs1251554 | 1.00[EUR][1000 genomes] |
rs1251559 | 1.00[EUR][1000 genomes] |
rs1251563 | 1.00[EUR][1000 genomes] |
rs1251585 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1251589 | 1.00[EUR][1000 genomes] |
rs1251590 | 1.00[EUR][1000 genomes] |
rs1251592 | 1.00[EUR][1000 genomes] |
rs1251593 | 1.00[EUR][1000 genomes] |
rs1469988 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1565718 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1565719 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1616175 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1658743 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1694408 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1694423 | 1.00[EUR][1000 genomes] |
rs17098016 | 1.00[EUR][1000 genomes] |
rs17098027 | 1.00[EUR][1000 genomes] |
rs17098034 | 1.00[EUR][1000 genomes] |
rs17098071 | 1.00[EUR][1000 genomes] |
rs1770514 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1770884 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1796809 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1873895 | 1.00[AMR][1000 genomes] |
rs2347963 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28675110 | 1.00[EUR][1000 genomes] |
rs60471485 | 1.00[EUR][1000 genomes] |
rs6691913 | 1.00[EUR][1000 genomes] |
rs6702596 | 1.00[EUR][1000 genomes] |
rs699689 | 1.00[EUR][1000 genomes] |
rs699826 | 1.00[EUR][1000 genomes] |
rs72988548 | 1.00[EUR][1000 genomes] |
rs72988551 | 1.00[EUR][1000 genomes] |
rs72990771 | 1.00[EUR][1000 genomes] |
rs72992611 | 1.00[EUR][1000 genomes] |
rs7515337 | 1.00[EUR][1000 genomes] |
rs7541791 | 1.00[EUR][1000 genomes] |
rs815312 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs946982 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014072 | chr1:76200531-76460726 | Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
2 | nsv535005 | chr1:76200531-76460726 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
3 | nsv1004669 | chr1:76301198-76409451 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
4 | nsv871671 | chr1:76304215-76391646 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
5 | nsv998499 | chr1:76361784-76598712 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |