Variant report

Variant	rs1889252
Chromosome Location	chr6:64527637-64527638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1119577	1.00[AMR][1000 genomes]
rs1197982	1.00[AMR][1000 genomes]
rs1197984	1.00[AMR][1000 genomes]
rs1681935	1.00[AMR][1000 genomes]
rs191186	1.00[AMR][1000 genomes]
rs319917	1.00[AMR][1000 genomes]
rs319921	1.00[AMR][1000 genomes]
rs319922	1.00[AMR][1000 genomes]
rs319927	1.00[AMR][1000 genomes]
rs319928	1.00[AMR][1000 genomes]
rs319929	1.00[AMR][1000 genomes]
rs321496	1.00[AMR][1000 genomes]
rs321497	1.00[AMR][1000 genomes]
rs321500	1.00[AMR][1000 genomes]
rs321501	1.00[AMR][1000 genomes]
rs35984090	1.00[AMR][1000 genomes]
rs368533	1.00[AMR][1000 genomes]
rs379412	1.00[AMR][1000 genomes]
rs412094	1.00[AMR][1000 genomes]
rs427518	1.00[AMR][1000 genomes]
rs434873	1.00[AMR][1000 genomes]
rs444713	1.00[AMR][1000 genomes]
rs4710445	1.00[AMR][1000 genomes]
rs499247	1.00[AMR][1000 genomes]
rs677894	1.00[AMR][1000 genomes]
rs6927476	1.00[AMR][1000 genomes]
rs6930550	1.00[AMR][1000 genomes]
rs9359559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64519200-64531400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:64525800-64527800	Enhancers	HSMMtube	muscle
3	chr6:64526200-64527800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:64526400-64527800	Enhancers	Fetal Heart	heart
5	chr6:64527000-64527800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:64527000-64527800	Enhancers	Fetal Brain Male	brain
7	chr6:64527200-64527800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:64527200-64527800	Enhancers	Placenta	Placenta
9	chr6:64527200-64529000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:64527400-64531400	Weak transcription	Pancreas	Pancrea
11	chr6:64527400-64533600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:64527600-64529000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:64527600-64530000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:64527600-64531600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:64527600-64533800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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