Variant report
| Variant | rs321496 |
|---|---|
| Chromosome Location | chr6:64579533-64579534 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:64577143..64578862-chr6:64579114..64581056,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1119577 | 1.00[AMR][1000 genomes] |
| rs1197982 | 1.00[AMR][1000 genomes] |
| rs1197984 | 1.00[AMR][1000 genomes] |
| rs12110746 | 0.83[MKK][hapmap] |
| rs1681935 | 1.00[AMR][1000 genomes] |
| rs1889252 | 1.00[AMR][1000 genomes] |
| rs191186 | 1.00[AMR][1000 genomes] |
| rs319917 | 1.00[AMR][1000 genomes] |
| rs319921 | 1.00[AMR][1000 genomes] |
| rs319922 | 1.00[AMR][1000 genomes] |
| rs319927 | 1.00[AMR][1000 genomes] |
| rs319928 | 1.00[AMR][1000 genomes] |
| rs319929 | 1.00[AMR][1000 genomes] |
| rs321497 | 1.00[AMR][1000 genomes] |
| rs321500 | 1.00[AMR][1000 genomes] |
| rs321501 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35984090 | 1.00[AMR][1000 genomes] |
| rs368533 | 1.00[AMR][1000 genomes] |
| rs379412 | 1.00[AMR][1000 genomes] |
| rs412094 | 1.00[AMR][1000 genomes] |
| rs427518 | 1.00[AMR][1000 genomes] |
| rs434873 | 1.00[AMR][1000 genomes] |
| rs444713 | 1.00[AMR][1000 genomes] |
| rs4710445 | 1.00[AMR][1000 genomes] |
| rs499247 | 1.00[AMR][1000 genomes] |
| rs677894 | 1.00[AMR][1000 genomes] |
| rs6927476 | 1.00[AMR][1000 genomes] |
| rs6930550 | 1.00[AMR][1000 genomes] |
| rs7754513 | 1.00[AMR][1000 genomes] |
| rs9359559 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024367 | chr6:64453493-64615908 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1025270 | chr6:64574202-64608983 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:64575000-64579800 | Weak transcription | Fetal Heart | heart |
| 2 | chr6:64579200-64580000 | Enhancers | Pancreatic Islets | Pancreatic Islet |
