Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:64518035-64518185	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
EYS	TF binding region

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1119577	1.00[AMR][1000 genomes]
rs1197982	1.00[AMR][1000 genomes]
rs1197984	1.00[AMR][1000 genomes]
rs1681935	1.00[AMR][1000 genomes]
rs1681938	1.00[YRI][hapmap]
rs1889252	1.00[AMR][1000 genomes]
rs319917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319921	1.00[AMR][1000 genomes]
rs319922	1.00[AMR][1000 genomes]
rs319927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319928	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319929	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs321496	1.00[AMR][1000 genomes]
rs321497	1.00[AMR][1000 genomes]
rs321500	1.00[AMR][1000 genomes]
rs321501	1.00[AMR][1000 genomes]
rs35984090	1.00[AMR][1000 genomes]
rs368533	1.00[AMR][1000 genomes]
rs379412	1.00[AMR][1000 genomes]
rs412094	1.00[AMR][1000 genomes]
rs427518	1.00[AMR][1000 genomes]
rs434873	1.00[AMR][1000 genomes]
rs444713	1.00[AMR][1000 genomes]
rs4710445	1.00[AMR][1000 genomes]
rs499247	1.00[AMR][1000 genomes]
rs677894	1.00[AMR][1000 genomes]
rs6927476	1.00[AMR][1000 genomes]
rs6930550	1.00[AMR][1000 genomes]
rs9359559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64514200-64519400	Enhancers	HSMM	muscle
2	chr6:64514400-64518600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr6:64516600-64518200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:64516600-64518200	Enhancers	HepG2	liver
5	chr6:64516800-64518200	Enhancers	Fetal Intestine Small	intestine
6	chr6:64517000-64518200	Enhancers	HMEC	breast
7	chr6:64517000-64518200	Weak transcription	NHLF	lung
8	chr6:64517000-64519600	Active TSS	HSMMtube	muscle
9	chr6:64517200-64518200	Enhancers	HUVEC	blood vessel
10	chr6:64517200-64518600	Enhancers	Hela-S3	cervix
11	chr6:64517200-64518800	Enhancers	NHDF-Ad	bronchial
12	chr6:64517200-64519400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:64517400-64518200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:64517400-64518200	Enhancers	NHEK	skin
15	chr6:64517400-64518600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:64517400-64519200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:64517400-64519600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr6:64517800-64518200	Enhancers	Fetal Intestine Large	intestine
19	chr6:64518000-64518200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:64518000-64518200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:64518000-64518200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:64518000-64518400	Enhancers	A549	lung

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