Variant report

Variant	rs677894
Chromosome Location	chr6:64568774-64568775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1119577	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1197982	1.00[AMR][1000 genomes]
rs1197984	1.00[AMR][1000 genomes]
rs1681935	1.00[AMR][1000 genomes]
rs1889252	1.00[AMR][1000 genomes]
rs191186	1.00[AMR][1000 genomes]
rs319917	1.00[AMR][1000 genomes]
rs319921	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319922	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319927	1.00[AMR][1000 genomes]
rs319928	1.00[AMR][1000 genomes]
rs319929	1.00[AMR][1000 genomes]
rs321496	1.00[AMR][1000 genomes]
rs321497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs321500	1.00[AMR][1000 genomes]
rs321501	1.00[AMR][1000 genomes]
rs35984090	1.00[AMR][1000 genomes]
rs368533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs379412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs412094	1.00[AMR][1000 genomes]
rs427518	1.00[AMR][1000 genomes]
rs434873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs444713	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4710445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs499247	1.00[AMR][1000 genomes]
rs6927476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930550	1.00[AMR][1000 genomes]
rs7754513	1.00[AMR][1000 genomes]
rs9359559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64566200-64571600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:64567200-64569800	Enhancers	Fetal Heart	heart
3	chr6:64568400-64569400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:64568600-64569000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:64568600-64570400	Enhancers	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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