Variant report

Variant	rs319922
Chromosome Location	chr6:64492978-64492979
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1119577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1197982	1.00[AMR][1000 genomes]
rs1197984	1.00[AMR][1000 genomes]
rs1681935	1.00[AMR][1000 genomes]
rs1681938	1.00[YRI][hapmap]
rs1889252	1.00[AMR][1000 genomes]
rs191186	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs319917	1.00[AMR][1000 genomes]
rs319921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319927	1.00[AMR][1000 genomes]
rs319928	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs319929	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs321496	1.00[AMR][1000 genomes]
rs321497	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs321500	1.00[AMR][1000 genomes]
rs321501	1.00[AMR][1000 genomes]
rs35984090	1.00[AMR][1000 genomes]
rs368533	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs379412	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs412094	1.00[AMR][1000 genomes]
rs427518	1.00[AMR][1000 genomes]
rs434873	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs444713	1.00[AMR][1000 genomes]
rs4710445	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs499247	1.00[AMR][1000 genomes]
rs677894	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6927476	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6930550	1.00[AMR][1000 genomes]
rs9359559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64485200-64514400	Weak transcription	Adipose Nuclei	Adipose
2	chr6:64492800-64493000	Enhancers	Liver	Liver
3	chr6:64492800-64493200	Active TSS	Duodenum Smooth Muscle	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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