Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1119577	1.00[AMR][1000 genomes]
rs1197982	1.00[AMR][1000 genomes]
rs1197984	1.00[AMR][1000 genomes]
rs1681935	1.00[AMR][1000 genomes]
rs1681938	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1889252	1.00[AMR][1000 genomes]
rs191186	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319921	1.00[AMR][1000 genomes]
rs319922	1.00[AMR][1000 genomes]
rs319927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319928	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs319929	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs321496	1.00[AMR][1000 genomes]
rs321497	1.00[AMR][1000 genomes]
rs321500	1.00[AMR][1000 genomes]
rs321501	1.00[AMR][1000 genomes]
rs35984090	1.00[AMR][1000 genomes]
rs368533	1.00[AMR][1000 genomes]
rs379412	1.00[AMR][1000 genomes]
rs412094	1.00[AMR][1000 genomes]
rs427518	1.00[AMR][1000 genomes]
rs434873	1.00[AMR][1000 genomes]
rs444713	1.00[AMR][1000 genomes]
rs4710445	1.00[AMR][1000 genomes]
rs499247	1.00[AMR][1000 genomes]
rs677894	1.00[AMR][1000 genomes]
rs6927476	1.00[AMR][1000 genomes]
rs6930550	1.00[AMR][1000 genomes]
rs9359559	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830674	chr6:64355412-64535801	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1024367	chr6:64453493-64615908	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1798215	chr6:64487748-64544220	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64519200-64531400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:64527400-64531400	Weak transcription	Pancreas	Pancrea
3	chr6:64527400-64533600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:64527600-64530000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:64527600-64531600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:64527600-64533800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:64527800-64529800	Weak transcription	Fetal Heart	heart
8	chr6:64527800-64531200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:64527800-64532800	Weak transcription	HSMMtube	muscle
10	chr6:64529000-64529600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:64529000-64530200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr6:64529000-64530600	Enhancers	Primary neutrophils fromperipheralblood	blood

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