Variant report

Variant	rs9359559
Chromosome Location	chr6:64347671-64347672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64344409..64347843-chr6:64354565..64357497,3	MCF-7	breast:
2	chr6:64280920..64286126-chr6:64341540..64349518,16	K562	blood:
3	chr6:64347568..64349664-chr6:64406239..64409987,3	K562	blood:
4	chr6:64345547..64349156-chr6:64414533..64419389,4	K562	blood:
5	chr6:64347337..64350491-chr6:64374830..64379357,4	K562	blood:
6	chr6:64281350..64286126-chr6:64342580..64350015,13	K562	blood:
7	chr6:64347461..64349165-chr6:64396342..64398673,2	K562	blood:

Variant related genes	Relation type
ENSG00000118482	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

rs_ID	r²[population]
rs1119577	1.00[AMR][1000 genomes]
rs1197982	1.00[AMR][1000 genomes]
rs1197984	1.00[AMR][1000 genomes]
rs1681935	1.00[AMR][1000 genomes]
rs1681938	1.00[AFR][1000 genomes]
rs1889252	1.00[AMR][1000 genomes]
rs191186	1.00[AMR][1000 genomes]
rs319917	1.00[AMR][1000 genomes]
rs319921	1.00[AMR][1000 genomes]
rs319922	1.00[AMR][1000 genomes]
rs319927	1.00[AMR][1000 genomes]
rs319928	1.00[AMR][1000 genomes]
rs319929	1.00[AMR][1000 genomes]
rs321496	1.00[AMR][1000 genomes]
rs321497	1.00[AMR][1000 genomes]
rs321500	1.00[AMR][1000 genomes]
rs321501	1.00[AMR][1000 genomes]
rs35984090	1.00[AMR][1000 genomes]
rs368533	1.00[AMR][1000 genomes]
rs379412	1.00[AMR][1000 genomes]
rs427518	1.00[AMR][1000 genomes]
rs434873	1.00[AMR][1000 genomes]
rs444713	1.00[AMR][1000 genomes]
rs4710445	1.00[AMR][1000 genomes]
rs499247	1.00[AMR][1000 genomes]
rs677894	1.00[AMR][1000 genomes]
rs6927476	1.00[AMR][1000 genomes]
rs6930550	1.00[AMR][1000 genomes]

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64344800-64347800	Active TSS	Thymus	Thymus
2	chr6:64344800-64348000	Active TSS	Stomach Smooth Muscle	stomach
3	chr6:64345000-64347800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr6:64345000-64347800	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:64345000-64347800	Active TSS	Brain Angular Gyrus	brain
6	chr6:64345000-64348200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:64345200-64347800	Active TSS	Ovary	ovary
8	chr6:64345200-64348000	Active TSS	H1 Cell Line	embryonic stem cell
9	chr6:64345200-64348200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:64345200-64348200	Active TSS	Fetal Intestine Large	intestine
11	chr6:64345200-64348600	Active TSS	GM12878-XiMat	blood
12	chr6:64345400-64347800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr6:64345400-64347800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:64345400-64347800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:64345400-64347800	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr6:64345400-64347800	Active TSS	Muscle Satellite Cultured Cells	--
17	chr6:64345400-64347800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:64345400-64347800	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:64345400-64347800	Active TSS	Fetal Intestine Small	intestine
20	chr6:64345400-64347800	Active TSS	A549	lung
21	chr6:64345400-64347800	Active TSS	NH-A	brain
22	chr6:64345400-64348000	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr6:64345400-64348000	Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:64345400-64348200	Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr6:64345400-64348200	Active TSS	HMEC	breast
26	chr6:64345400-64348400	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr6:64345400-64348400	Active TSS	K562	blood
28	chr6:64345400-64349400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:64345600-64348000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:64346200-64347800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:64346400-64347800	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr6:64346400-64349000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:64346600-64348000	Active TSS	Brain Germinal Matrix	brain
34	chr6:64346600-64348000	Active TSS	Right Atrium	heart
35	chr6:64346600-64348200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr6:64346600-64348200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:64346800-64347800	Active TSS	Colonic Mucosa	Colon
38	chr6:64346800-64347800	Flanking Active TSS	HUVEC	blood vessel
39	chr6:64346800-64348000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:64346800-64348000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:64346800-64348000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
42	chr6:64347000-64347800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:64347000-64347800	Flanking Active TSS	Osteobl	bone
44	chr6:64347000-64348000	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr6:64347000-64348200	Flanking Active TSS	Liver	Liver
46	chr6:64347000-64348400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:64347000-64349600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:64347000-64349600	Weak transcription	Small Intestine	intestine
49	chr6:64347000-64351000	Weak transcription	Pancreas	Pancrea
50	chr6:64347000-64354800	Weak transcription	Lung	lung

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