Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10002735	0.83[AMR][1000 genomes]
rs10021306	0.83[AMR][1000 genomes]
rs10025080	0.83[AMR][1000 genomes]
rs10033262	0.83[AMR][1000 genomes]
rs11934767	0.83[AMR][1000 genomes]
rs11939350	0.83[AMR][1000 genomes]
rs11943657	0.83[AMR][1000 genomes]
rs1849541	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379252	0.83[AMR][1000 genomes]
rs28452597	0.83[AMR][1000 genomes]
rs28475189	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28578495	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28676618	0.83[AMR][1000 genomes]
rs28754425	0.83[AMR][1000 genomes]
rs55842595	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6827460	0.83[AMR][1000 genomes]
rs6833077	0.83[AMR][1000 genomes]
rs73105917	0.83[AMR][1000 genomes]
rs73108038	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664829	0.83[AMR][1000 genomes]
rs7681022	0.83[AMR][1000 genomes]
rs7695914	0.83[AMR][1000 genomes]
rs7699892	0.92[YRI][hapmap]
rs986698	0.83[AMR][1000 genomes]
rs9991759	0.83[AMR][1000 genomes]
rs9999185	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv291226	chr4:21833309-21839155	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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