Variant report

Variant	rs2215466
Chromosome Location	chr3:52489074-52489075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:32)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:32 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:52489030-52490008	GM12892	blood:	n/a	n/a
2	MAX	chr3:52489015-52489966	A549	lung:	n/a	chr3:52489875-52489885
3	POLR2A	chr3:52489062-52490073	K562	blood:	n/a	n/a
4	POLR2A	chr3:52488540-52489867	Raji	blood:	n/a	n/a
5	CHD2	chr3:52488996-52489680	Hela-S3	cervix:	n/a	n/a
6	E2F6	chr3:52488886-52489773	K562	blood:	n/a	chr3:52489758-52489767 chr3:52489600-52489609
7	MYC	chr3:52489051-52489796	K562	blood:	n/a	n/a
8	MTA3	chr3:52488957-52489967	GM12878	blood:	n/a	n/a
9	MAX	chr3:52488751-52489903	HepG2	liver:	n/a	chr3:52489875-52489885
10	CEBPB	chr3:52489063-52489569	ECC-1	luminal epithelium:	n/a	n/a
11	POLR2A	chr3:52489023-52489993	PFSK-1	brain:	n/a	n/a
12	POLR2A	chr3:52488419-52489898	K562	blood:	n/a	n/a
13	MAX	chr3:52488692-52489939	HepG2	liver:	n/a	chr3:52489875-52489885
14	CEBPB	chr3:52488981-52489734	ECC-1	luminal epithelium:	n/a	n/a
15	HCFC1	chr3:52488514-52490426	Hela-S3	cervix:	n/a	n/a
16	CEBPB	chr3:52488989-52489963	HCT-116	colon:	n/a	n/a
17	MAX	chr3:52488795-52489853	K562	blood:	n/a	n/a
18	MXI1	chr3:52488611-52491002	SK-N-SH	brain:	n/a	n/a
19	MAX	chr3:52488867-52489142	K562	blood:	n/a	n/a
20	CEBPB	chr3:52489059-52489649	K562	blood:	n/a	n/a
21	CEBPB	chr3:52488941-52489837	HCT-116	colon:	n/a	n/a
22	REST	chr3:52488954-52491144	H1-neurons	neurons:	n/a	n/a
23	STAT5A	chr3:52488988-52489460	GM12878	blood:	n/a	n/a
24	POLR2A	chr3:52488967-52489886	GM18505	blood:	n/a	n/a
25	PML	chr3:52489072-52489943	GM12878	blood:	n/a	n/a
26	ZEB1	chr3:52488960-52489909	GM12878	blood:	n/a	n/a
27	POLR2A	chr3:52489001-52489968	K562	blood:	n/a	n/a
28	MYC	chr3:52488906-52489819	K562	blood:	n/a	n/a
29	MAX	chr3:52488962-52489801	K562	blood:	n/a	n/a
30	E2F6	chr3:52489050-52489896	H1-hESC	embryonic stem cell:	n/a	chr3:52489758-52489767 chr3:52489600-52489609
31	E2F6	chr3:52488917-52489138	K562	blood:	n/a	n/a
32	POLR2A	chr3:52487592-52491009	HepG2	liver:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:52486786..52490623-chr3:52738506..52740742,3	MCF-7	breast:
2	chr3:52487939..52491238-chr3:52504089..52507877,6	MCF-7	breast:
3	chr3:52487901..52490154-chr3:52491189..52493164,2	K562	blood:
4	chr3:52488362..52490407-chr3:52528579..52530282,2	K562	blood:
5	chr3:52487897..52490713-chr3:52565636..52568320,3	K562	blood:
6	chr3:52488681..52492997-chr3:52505692..52511376,6	K562	blood:
7	chr3:52488315..52491899-chr3:52569459..52572680,4	MCF-7	breast:
8	chr3:52487997..52491865-chr3:52718755..52722667,5	MCF-7	breast:
9	chr3:52485198..52486814-chr3:52487911..52490387,2	K562	blood:
10	chr3:52447983..52449593-chr3:52487471..52490265,2	K562	blood:
11	chr3:52488081..52492441-chr3:52568649..52570860,4	K562	blood:
12	chr3:52444497..52446102-chr3:52488760..52490756,2	K562	blood:
13	chr3:52481830..52487806-chr3:52487911..52490298,8	K562	blood:
14	chr3:52321768..52324071-chr3:52488633..52490328,2	K562	blood:

No data

Variant related genes	Relation type
TNNC1	TF binding region
NISCH	TF binding region
ENSG00000168237	Chromatin interaction
ENSG00000010318	Chromatin interaction
ENSG00000163939	Chromatin interaction
ENSG00000010322	Chromatin interaction
ENSG00000163938	Chromatin interaction
ENSG00000114854	Chromatin interaction
ENSG00000168268	Chromatin interaction
ENSG00000164091	Chromatin interaction
ENSG00000010327	Chromatin interaction
ENSG00000114902	Chromatin interaction
ENSG00000016864	Chromatin interaction
ENSG00000168273	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1011062	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011063	1.00[JPT][hapmap]
rs1011064	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1035002	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1035003	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1077142	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10865972	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11707864	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11707931	1.00[JPT][hapmap]
rs11709658	1.00[JPT][hapmap]
rs11711934	1.00[JPT][hapmap]
rs11714402	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11716017	1.00[JPT][hapmap]
rs11718125	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11721286	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs123598	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs123602	1.00[JPT][hapmap]
rs123603	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13059674	1.00[JPT][hapmap]
rs13060192	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs13065677	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13071708	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13074649	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075370	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13076508	1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs13076890	1.00[JPT][hapmap]
rs13089892	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13091360	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13091545	1.00[JPT][hapmap]
rs13093555	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13096571	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13098856	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1541495	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs164636	0.82[AMR][1000 genomes]
rs164637	0.82[AMR][1000 genomes]
rs17052058	1.00[JPT][hapmap]
rs17052061	1.00[JPT][hapmap]
rs17052068	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2016575	1.00[JPT][hapmap]
rs2109557	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2109558	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2109559	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs2159607	1.00[JPT][hapmap]
rs2335640	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2335928	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335929	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2878549	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34181173	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34332947	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34385735	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34551211	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34628357	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34762015	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs34827613	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35130772	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs353545	0.82[AMR][1000 genomes]
rs35860312	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs35982798	1.00[AFR][1000 genomes]
rs3755810	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3774410	1.00[JPT][hapmap]
rs3796342	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs3796343	1.00[JPT][hapmap]
rs390802	1.00[JPT][hapmap]
rs409803	1.00[JPT][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs419050	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs419604	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs419752	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4312651	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687541	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687543	0.83[EUR][1000 genomes]
rs4687544	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687614	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687616	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4687617	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4687618	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687619	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4687621	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498778	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs498946	1.00[JPT][hapmap]
rs575476	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs613519	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs61734640	1.00[AFR][1000 genomes]
rs634382	1.00[JPT][hapmap]
rs6414568	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445386	1.00[JPT][hapmap]
rs6445483	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445484	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445485	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445486	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445506	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs676034	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763882	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6771558	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6782162	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784615	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6787493	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6795333	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6796333	1.00[JPT][hapmap]
rs6800707	1.00[JPT][hapmap]
rs6810027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71297391	1.00[AFR][1000 genomes]
rs71297394	1.00[AFR][1000 genomes]
rs71297395	1.00[AFR][1000 genomes]
rs71297396	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs728408	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs758800	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes]
rs758803	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620015	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs82825	1.00[JPT][hapmap]
rs887514	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.91[EUR][1000 genomes]
rs887515	1.00[JPT][hapmap]
rs929528	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929529	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs968588	0.85[AMR][1000 genomes]
rs9844183	1.00[JPT][hapmap]
rs9846089	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9847332	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850471	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9855470	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9863753	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9867823	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876789	chr3:52247110-52575831	Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
2	nsv984542	chr3:52285682-52516115	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
3	nsv834697	chr3:52400578-52579417	Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv876792	chr3:52430526-52575831	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv876793	chr3:52450043-52584787	Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	esv1818902	chr3:52481406-52572056	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv876794	chr3:52485876-52496229	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:52481200-52490000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:52483800-52489200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:52484600-52489200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:52485200-52489200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:52485600-52489400	Flanking Active TSS	HepG2	liver
6	chr3:52486200-52489200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:52486600-52489200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr3:52486600-52489200	Enhancers	Gastric	stomach
9	chr3:52487200-52489400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr3:52487800-52489200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr3:52487800-52489200	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr3:52487800-52489200	Enhancers	Spleen	Spleen
13	chr3:52488200-52489200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:52488200-52489200	Enhancers	Lung	lung
15	chr3:52488200-52489400	Flanking Active TSS	Right Ventricle	heart
16	chr3:52488200-52489400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr3:52488200-52489400	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr3:52488200-52489400	Flanking Active TSS	Hela-S3	cervix
19	chr3:52488200-52489400	Flanking Active TSS	HSMMtube	muscle
20	chr3:52488400-52489200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:52488400-52489200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr3:52488400-52489200	Flanking Active TSS	Left Ventricle	heart
23	chr3:52488400-52489200	Enhancers	Small Intestine	intestine
24	chr3:52488400-52489400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr3:52488400-52489400	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr3:52488400-52489400	Flanking Active TSS	Fetal Heart	heart
27	chr3:52488400-52489400	Flanking Active TSS	Rectal Smooth Muscle	rectum
28	chr3:52488600-52489200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr3:52488600-52489200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:52488600-52489200	Flanking Active TSS	Colonic Mucosa	Colon
31	chr3:52488600-52489400	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr3:52488600-52489400	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr3:52488600-52489400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr3:52488600-52489400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr3:52488600-52489400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
36	chr3:52488600-52489400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr3:52488600-52489400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
38	chr3:52488600-52489400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr3:52488600-52489400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:52488600-52489400	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr3:52488600-52489400	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr3:52488600-52489400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
43	chr3:52488600-52489400	Flanking Active TSS	GM12878-XiMat	blood
44	chr3:52488600-52490600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:52488800-52489200	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr3:52488800-52489200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:52488800-52489200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr3:52488800-52489200	Enhancers	Fetal Brain Male	brain
49	chr3:52488800-52489400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr3:52488800-52489400	Flanking Active TSS	Primary B cells from cord blood	blood

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