Variant report

Variant rs17052068
Chromosome Location chr3:52352864-52352865
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52328200-52366000 Weak transcription Brain Angular Gyrus brain
2 chr3:52328800-52367600 Weak transcription Brain Substantia Nigra brain
3 chr3:52330400-52378600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
4 chr3:52344600-52378600 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr3:52348000-52353600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr3:52349000-52357200 Weak transcription HepG2 liver
7 chr3:52350600-52353800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr3:52350600-52362400 Weak transcription Brain Cingulate Gyrus brain
9 chr3:52351000-52353600 Weak transcription Liver Liver
10 chr3:52351200-52353200 Enhancers Primary T killer memory cells from peripheral blood blood
11 chr3:52351800-52354200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr3:52352000-52353200 Bivalent Enhancer Fetal Muscle Leg muscle
13 chr3:52352000-52353200 Enhancers Left Ventricle heart
14 chr3:52352000-52353200 Enhancers Skeletal Muscle Female skeletal muscle
15 chr3:52352000-52353800 Weak transcription HMEC breast
16 chr3:52352000-52356200 Weak transcription K562 blood
17 chr3:52352000-52356800 Weak transcription Primary neutrophils fromperipheralblood blood
18 chr3:52352000-52360600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
19 chr3:52352000-52361400 Weak transcription Brain Hippocampus Middle brain
20 chr3:52352000-52362200 Weak transcription Thymus Thymus
21 chr3:52352000-52365000 Weak transcription Brain Inferior Temporal Lobe brain
22 chr3:52352000-52365200 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr3:52352000-52365800 Weak transcription Aorta Aorta
24 chr3:52352000-52367600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr3:52352000-52379800 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr3:52352200-52353600 Enhancers Skeletal Muscle Male skeletal muscle
27 chr3:52352200-52357600 Weak transcription Duodenum Mucosa Duodenum
28 chr3:52352200-52357600 Weak transcription Fetal Intestine Large intestine
29 chr3:52352200-52357800 Weak transcription Ovary ovary
30 chr3:52352200-52362000 Weak transcription Primary T helper cells fromperipheralblood blood
31 chr3:52352200-52364800 Weak transcription Primary T regulatory cells fromperipheralblood blood
32 chr3:52352200-52370800 Weak transcription Primary hematopoietic stem cells blood
33 chr3:52352200-52379000 Weak transcription Colonic Mucosa Colon
34 chr3:52352200-52382000 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr3:52352200-52384600 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr3:52352400-52357400 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr3:52352400-52360000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr3:52352400-52360800 Weak transcription Primary monocytes fromperipheralblood blood
39 chr3:52352400-52361200 Weak transcription Monocytes-CD14+_RO01746 blood
40 chr3:52352400-52364600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr3:52352400-52364800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
42 chr3:52352400-52365200 Weak transcription Placenta Placenta
43 chr3:52352400-52366000 Weak transcription Primary B cells from peripheral blood blood
44 chr3:52352400-52366000 Weak transcription Adipose Nuclei Adipose
45 chr3:52352400-52366200 Weak transcription Primary T helper cells PMA-I stimulated --
46 chr3:52352600-52353200 Enhancers Stomach Smooth Muscle stomach
47 chr3:52352600-52353600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
48 chr3:52352600-52354200 Weak transcription Fetal Muscle Trunk muscle
49 chr3:52352600-52355600 Weak transcription Fetal Intestine Small intestine
50 chr3:52352600-52356000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell

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