Variant report

Variant rs3774409
Chromosome Location chr3:52496229-52496230
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:52490800-52499200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr3:52491200-52498800 Strong transcription Primary T cells from cord blood blood
3 chr3:52491400-52497200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr3:52491400-52500000 Strong transcription HUES48 Cell Line embryonic stem cell
5 chr3:52491400-52501600 Weak transcription Right Atrium heart
6 chr3:52491400-52502200 Strong transcription iPS-20b Cell Line embryonic stem cell
7 chr3:52491600-52496800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
8 chr3:52491600-52499600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr3:52491600-52500000 Strong transcription Fetal Intestine Large intestine
10 chr3:52491600-52500600 Strong transcription Fetal Intestine Small intestine
11 chr3:52491600-52509400 Weak transcription Small Intestine intestine
12 chr3:52491600-52528000 Strong transcription Thymus Thymus
13 chr3:52491800-52496400 Strong transcription Skeletal Muscle Male skeletal muscle
14 chr3:52491800-52496600 Strong transcription Duodenum Smooth Muscle Duodenum
15 chr3:52491800-52496800 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr3:52491800-52496800 Strong transcription Brain Anterior Caudate brain
17 chr3:52491800-52497200 Strong transcription Fetal Muscle Leg muscle
18 chr3:52491800-52497200 Strong transcription Stomach Smooth Muscle stomach
19 chr3:52491800-52497400 Strong transcription H1 Cell Line embryonic stem cell
20 chr3:52491800-52497400 Strong transcription Rectal Smooth Muscle rectum
21 chr3:52491800-52498400 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr3:52491800-52498600 Strong transcription Liver Liver
23 chr3:52491800-52499400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr3:52491800-52499400 Strong transcription Osteobl bone
25 chr3:52491800-52499600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr3:52491800-52500000 Strong transcription Lung lung
27 chr3:52491800-52500200 Strong transcription iPS-18 Cell Line embryonic stem cell
28 chr3:52491800-52502400 Strong transcription HUES6 Cell Line embryonic stem cell
29 chr3:52491800-52502400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr3:52491800-52502800 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr3:52491800-52506400 Weak transcription Stomach Mucosa stomach
32 chr3:52491800-52517200 Strong transcription Fetal Stomach stomach
33 chr3:52491800-52524000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr3:52491800-52527000 Strong transcription HUES64 Cell Line embryonic stem cell
35 chr3:52491800-52528200 Strong transcription Cortex derived primary cultured neurospheres brain
36 chr3:52491800-52528200 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
37 chr3:52492000-52496400 Strong transcription Left Ventricle heart
38 chr3:52492000-52496600 Strong transcription Sigmoid Colon Sigmoid Colon
39 chr3:52492000-52496600 Strong transcription HSMMtube muscle
40 chr3:52492000-52497000 Strong transcription Primary T helper naive cells fromperipheralblood blood
41 chr3:52492000-52497200 Strong transcription Brain Hippocampus Middle brain
42 chr3:52492000-52500000 Strong transcription Placenta Placenta
43 chr3:52492000-52500600 Strong transcription Fetal Muscle Trunk muscle
44 chr3:52492000-52502400 Strong transcription Primary hematopoietic stem cells short term culture blood
45 chr3:52492000-52502600 Strong transcription Primary T regulatory cells fromperipheralblood blood
46 chr3:52492000-52503400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr3:52492000-52516800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
48 chr3:52492000-52517200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr3:52492200-52496600 Strong transcription Primary neutrophils fromperipheralblood blood
50 chr3:52492200-52506200 Weak transcription Primary T killer naive cells fromperipheralblood blood

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