The 2.0 version of rSNPBase

Variant report

Variant rs2223909
Chromosome Location chr1:186921476-186921477
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186881800-186933600 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr1:186881800-186951200 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr1:186890000-186924400 Weak transcription Fetal Stomach stomach
4 chr1:186890800-186928400 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr1:186892800-186924000 Strong transcription Primary monocytes fromperipheralblood blood
6 chr1:186895400-186937000 Weak transcription Rectal Smooth Muscle rectum
7 chr1:186900000-186935800 Weak transcription NHDF-Ad bronchial
8 chr1:186904000-186925200 Weak transcription Breast Myoepithelial Primary Cells Breast
9 chr1:186908000-186933800 Weak transcription Colon Smooth Muscle Colon
10 chr1:186909800-186922600 Weak transcription Duodenum Mucosa Duodenum
11 chr1:186909800-186932600 Weak transcription Rectal Mucosa Donor 31 rectum
12 chr1:186912400-186934600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr1:186915600-186923200 Strong transcription Primary hematopoietic stem cells blood
14 chr1:186917000-186929000 Weak transcription Placenta Amnion Placenta Amnion
15 chr1:186917400-186934800 Weak transcription Colonic Mucosa Colon
16 chr1:186917600-186922600 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr1:186919000-186923000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
18 chr1:186919000-186937000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr1:186919200-186923200 Strong transcription Primary neutrophils fromperipheralblood blood
20 chr1:186919400-186925400 Weak transcription Stomach Smooth Muscle stomach
21 chr1:186919600-186944800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr1:186919800-186924000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr1:186919800-186928600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:186920000-186922800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr1:186920000-186925200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr1:186920200-186924600 Weak transcription Hela-S3 cervix
27 chr1:186920200-186925200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr1:186920400-186922000 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr1:186920400-186933600 Weak transcription Adipose Nuclei Adipose
30 chr1:186920400-186939000 Weak transcription A549 lung
31 chr1:186920800-186921600 Enhancers Fetal Intestine Large intestine
32 chr1:186920800-186922200 Enhancers Fetal Intestine Small intestine
33 chr1:186920800-186924400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr1:186921000-186926000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015