The 2.0 version of rSNPBase

Variant report

Variant rs6425054
Chromosome Location chr1:186881615-186881616
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186839200-186884800 Weak transcription Duodenum Mucosa Duodenum
2 chr1:186854000-186897200 Weak transcription Lung lung
3 chr1:186864600-186897000 Weak transcription Esophagus oesophagus
4 chr1:186866200-186883200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr1:186866200-186885000 Weak transcription HUVEC blood vessel
6 chr1:186866400-186883000 Weak transcription A549 lung
7 chr1:186868800-186897000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr1:186869000-186896600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:186871000-186884600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:186871400-186904000 Weak transcription Hela-S3 cervix
11 chr1:186873800-186896800 Weak transcription Small Intestine intestine
12 chr1:186877000-186886000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr1:186878600-186895000 Weak transcription Placenta Amnion Placenta Amnion
14 chr1:186878800-186888600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:186879200-186888400 Weak transcription Spleen Spleen
16 chr1:186879800-186881800 Strong transcription Monocytes-CD14+_RO01746 blood
17 chr1:186880000-186888800 Strong transcription Primary monocytes fromperipheralblood blood
18 chr1:186880200-186881800 Strong transcription Colon Smooth Muscle Colon
19 chr1:186880200-186882000 Strong transcription Breast Myoepithelial Primary Cells Breast
20 chr1:186880200-186882000 Strong transcription Primary neutrophils fromperipheralblood blood
21 chr1:186880200-186882000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:186880400-186883200 Weak transcription Fetal Intestine Small intestine
23 chr1:186880400-186883800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
24 chr1:186880400-186891600 Weak transcription Aorta Aorta
25 chr1:186880800-186881800 Strong transcription Duodenum Smooth Muscle Duodenum
26 chr1:186881000-186881800 Strong transcription Adipose Nuclei Adipose
27 chr1:186881000-186881800 Strong transcription Rectal Mucosa Donor 31 rectum
28 chr1:186881000-186881800 Strong transcription Rectal Smooth Muscle rectum
29 chr1:186881200-186881800 Strong transcription Rectal Mucosa Donor 29 rectum
30 chr1:186881400-186885800 Weak transcription Osteobl bone
31 chr1:186881400-186887000 Weak transcription Fetal Stomach stomach
32 chr1:186881600-186883200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr1:186881600-186884600 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr1:186881600-186886000 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:186881600-186891400 Weak transcription Fetal Intestine Large intestine
36 chr1:186881600-186894600 Weak transcription Stomach Smooth Muscle stomach
37 chr1:186881600-186895000 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015