The 2.0 version of rSNPBase

Variant report

Variant rs6664561
Chromosome Location chr1:186920389-186920390
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:37 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186881800-186933600 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr1:186881800-186951200 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr1:186890000-186924400 Weak transcription Fetal Stomach stomach
4 chr1:186890800-186928400 Strong transcription Monocytes-CD14+_RO01746 blood
5 chr1:186892800-186924000 Strong transcription Primary monocytes fromperipheralblood blood
6 chr1:186895400-186937000 Weak transcription Rectal Smooth Muscle rectum
7 chr1:186897600-186920800 Weak transcription Fetal Intestine Small intestine
8 chr1:186900000-186935800 Weak transcription NHDF-Ad bronchial
9 chr1:186904000-186925200 Weak transcription Breast Myoepithelial Primary Cells Breast
10 chr1:186906600-186920800 Weak transcription Fetal Intestine Large intestine
11 chr1:186908000-186933800 Weak transcription Colon Smooth Muscle Colon
12 chr1:186909800-186922600 Weak transcription Duodenum Mucosa Duodenum
13 chr1:186909800-186932600 Weak transcription Rectal Mucosa Donor 31 rectum
14 chr1:186912400-186934600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
15 chr1:186915600-186923200 Strong transcription Primary hematopoietic stem cells blood
16 chr1:186917000-186929000 Weak transcription Placenta Amnion Placenta Amnion
17 chr1:186917400-186934800 Weak transcription Colonic Mucosa Colon
18 chr1:186917600-186922600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:186918000-186921000 Weak transcription Left Ventricle heart
20 chr1:186919000-186921200 Enhancers HUVEC blood vessel
21 chr1:186919000-186923000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr1:186919000-186937000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:186919200-186920400 Enhancers NHEK skin
24 chr1:186919200-186923200 Strong transcription Primary neutrophils fromperipheralblood blood
25 chr1:186919400-186925400 Weak transcription Stomach Smooth Muscle stomach
26 chr1:186919600-186944800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
27 chr1:186919800-186920400 Genic enhancers A549 lung
28 chr1:186919800-186924000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:186919800-186928600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr1:186920000-186920400 Strong transcription Primary hematopoietic stem cells short term culture blood
31 chr1:186920000-186920400 Enhancers Adipose Nuclei Adipose
32 chr1:186920000-186920800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:186920000-186921000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr1:186920000-186922800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:186920000-186925200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr1:186920200-186924600 Weak transcription Hela-S3 cervix
37 chr1:186920200-186925200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015