The 2.0 version of rSNPBase

Variant report

Variant rs2307199
Chromosome Location chr1:186925552-186925553
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:36 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:186881800-186933600 Weak transcription Duodenum Smooth Muscle Duodenum
2 chr1:186881800-186951200 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr1:186890800-186928400 Strong transcription Monocytes-CD14+_RO01746 blood
4 chr1:186895400-186937000 Weak transcription Rectal Smooth Muscle rectum
5 chr1:186900000-186935800 Weak transcription NHDF-Ad bronchial
6 chr1:186908000-186933800 Weak transcription Colon Smooth Muscle Colon
7 chr1:186909800-186932600 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:186912400-186934600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:186917000-186929000 Weak transcription Placenta Amnion Placenta Amnion
10 chr1:186917400-186934800 Weak transcription Colonic Mucosa Colon
11 chr1:186919000-186937000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr1:186919600-186944800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:186919800-186928600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr1:186920400-186933600 Weak transcription Adipose Nuclei Adipose
15 chr1:186920400-186939000 Weak transcription A549 lung
16 chr1:186921000-186926000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr1:186921600-186935400 Weak transcription Fetal Intestine Large intestine
18 chr1:186922200-186925600 Weak transcription Fetal Intestine Small intestine
19 chr1:186923000-186926000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr1:186923200-186926600 Weak transcription Primary hematopoietic stem cells blood
21 chr1:186923400-186958800 Weak transcription Duodenum Mucosa Duodenum
22 chr1:186923800-186928000 Weak transcription Fetal Lung lung
23 chr1:186924800-186925600 Weak transcription Fetal Stomach stomach
24 chr1:186924800-186926400 Weak transcription Hela-S3 cervix
25 chr1:186925000-186926600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr1:186925000-186927000 Strong transcription Primary neutrophils fromperipheralblood blood
27 chr1:186925000-186927400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:186925000-186927600 Strong transcription Primary monocytes fromperipheralblood blood
29 chr1:186925200-186925800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:186925200-186926600 Strong transcription Breast Myoepithelial Primary Cells Breast
31 chr1:186925200-186927200 Strong transcription Primary hematopoietic stem cells short term culture blood
32 chr1:186925200-186927200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:186925200-186927400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
34 chr1:186925200-186928000 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:186925400-186925800 Strong transcription Stomach Smooth Muscle stomach
36 chr1:186925400-186929200 Weak transcription iPS-15b Cell Line embryonic stem cell

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Last update: Aug 31, 2015