Variant report

Variant	rs2224773
Chromosome Location	chr9:100824223-100824224
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100823141..100827568-chr9:100835845..100837989,3	MCF-7	breast:
2	chr9:100746648..100748229-chr9:100822412..100824498,2	MCF-7	breast:
3	chr9:100820689..100822776-chr9:100823410..100826294,2	MCF-7	breast:
4	chr9:100822595..100824589-chr9:100834188..100836915,2	MCF-7	breast:
5	chr9:100817784..100820803-chr9:100821828..100828564,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1059273	0.83[ASN][1000 genomes]
rs12554583	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs16912622	0.84[ASN][1000 genomes]
rs2281732	0.84[ASN][1000 genomes]
rs3739670	0.88[ASN][1000 genomes]
rs3780471	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4300105	0.91[ASN][1000 genomes]
rs4394518	0.86[ASN][1000 genomes]
rs4562446	0.86[ASN][1000 genomes]
rs4742716	0.84[ASN][1000 genomes]
rs4743157	0.86[ASN][1000 genomes]
rs4743158	0.88[ASN][1000 genomes]
rs4743159	0.83[ASN][1000 genomes]
rs55978131	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs58427887	0.88[ASN][1000 genomes]
rs6478539	0.86[ASN][1000 genomes]
rs6478556	0.84[ASN][1000 genomes]
rs7020081	0.90[ASN][1000 genomes]
rs7034147	0.88[ASN][1000 genomes]
rs7038592	0.90[ASN][1000 genomes]
rs7041811	0.88[ASN][1000 genomes]
rs7046514	0.86[ASN][1000 genomes]
rs73492791	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7846772	0.86[ASN][1000 genomes]
rs7846880	0.88[ASN][1000 genomes]
rs7848430	0.86[ASN][1000 genomes]
rs7862535	0.90[ASN][1000 genomes]
rs7867404	0.86[ASN][1000 genomes]
rs7869762	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2224773	TRIM14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100826800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:100820000-100826800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr9:100820000-100828400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:100820000-100836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:100820000-100836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:100820000-100836600	Weak transcription	Brain Angular Gyrus	brain
8	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
9	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
11	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
12	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
14	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
15	chr9:100820200-100825800	Weak transcription	Primary B cells from cord blood	blood
16	chr9:100820200-100843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr9:100820600-100825800	Weak transcription	Fetal Lung	lung
18	chr9:100820600-100826200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr9:100820600-100826200	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:100821000-100826200	Weak transcription	NH-A	brain
21	chr9:100821000-100827000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:100821000-100836400	Weak transcription	Colon Smooth Muscle	Colon
23	chr9:100821200-100826200	Weak transcription	Dnd41	blood
24	chr9:100821200-100826200	Weak transcription	HMEC	breast
25	chr9:100821200-100826400	Weak transcription	Brain Hippocampus Middle	brain
26	chr9:100821200-100826600	Weak transcription	Small Intestine	intestine
27	chr9:100821200-100836400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr9:100821200-100836600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
30	chr9:100821400-100824400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr9:100821400-100828200	Weak transcription	NHDF-Ad	bronchial
32	chr9:100821600-100832400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:100822000-100827200	Strong transcription	NHEK	skin
34	chr9:100822200-100832200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:100822200-100832400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr9:100822400-100826800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:100822400-100828600	Weak transcription	Stomach Mucosa	stomach
38	chr9:100822400-100829800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:100822400-100832200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr9:100822400-100836400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr9:100822400-100836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr9:100822800-100824400	Strong transcription	Primary hematopoietic stem cells	blood
43	chr9:100822800-100824800	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr9:100822800-100825200	Strong transcription	K562	blood
45	chr9:100822800-100828600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr9:100822800-100829400	Strong transcription	GM12878-XiMat	blood
47	chr9:100822800-100829600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:100822800-100829800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr9:100822800-100831200	Strong transcription	Fetal Stomach	stomach
50	chr9:100822800-100832200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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