Variant report

Variant	rs2281732
Chromosome Location	chr9:100845007-100845008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100838525..100840109-chr9:100844644..100847387,2	MCF-7	breast:
2	chr9:100842983..100846250-chr9:100851999..100855804,4	MCF-7	breast:
3	chr9:100818415..100820201-chr9:100844089..100845708,2	MCF-7	breast:
4	chr9:100842880..100846056-chr9:100849764..100852020,3	MCF-7	breast:
5	chr9:100842559..100845315-chr9:101012488..101014157,2	MCF-7	breast:
6	chr9:100842650..100845592-chr9:100845952..100848847,2	MCF-7	breast:
7	chr9:100843269..100846185-chr9:100848032..100850204,2	K562	blood:
8	chr9:100843832..100846656-chr9:100852067..100855805,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000106785	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1059273	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10985065	0.82[JPT][hapmap]
rs12552242	0.82[JPT][hapmap]
rs12554583	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16912622	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2224773	0.84[ASN][1000 genomes]
rs3739670	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4300105	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4394518	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4562446	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4742716	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743157	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743158	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743159	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55978131	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58427887	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6478539	0.95[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6478556	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478563	0.82[JPT][hapmap]
rs7020081	0.95[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7022455	0.82[JPT][hapmap]
rs7034147	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7038592	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7041811	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7046514	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7846772	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7846880	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7848430	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7855251	0.82[JPT][hapmap]
rs7862535	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7867404	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7869762	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2281732	TRIM14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
4	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
5	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
6	chr9:100837400-100845200	Strong transcription	K562	blood
7	chr9:100838200-100852800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr9:100838600-100848400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:100838600-100852000	Strong transcription	GM12878-XiMat	blood
10	chr9:100839000-100848400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:100839000-100849600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr9:100839000-100849800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr9:100839200-100847400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:100839400-100847600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:100839400-100847800	Strong transcription	Fetal Muscle Trunk	muscle
16	chr9:100839400-100848600	Strong transcription	Fetal Stomach	stomach
17	chr9:100839400-100850400	Strong transcription	Dnd41	blood
18	chr9:100839400-100861800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr9:100839600-100849400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:100839600-100850600	Strong transcription	Thymus	Thymus
21	chr9:100839800-100845200	Strong transcription	Adipose Nuclei	Adipose
22	chr9:100839800-100847400	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:100840000-100845400	Strong transcription	Spleen	Spleen
24	chr9:100840000-100846000	Strong transcription	Rectal Smooth Muscle	rectum
25	chr9:100840000-100846400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:100840000-100846600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:100840000-100846800	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr9:100840000-100847000	Strong transcription	Primary hematopoietic stem cells	blood
29	chr9:100840000-100847800	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr9:100841200-100846000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr9:100841600-100848200	Strong transcription	Primary T cells from cord blood	blood
32	chr9:100841800-100845400	Strong transcription	Fetal Muscle Leg	muscle
33	chr9:100841800-100845600	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr9:100841800-100846400	Genic enhancers	Rectal Mucosa Donor 31	rectum
35	chr9:100842000-100845600	Genic enhancers	Placenta	Placenta
36	chr9:100842000-100845800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr9:100842000-100845800	Genic enhancers	HSMMtube	muscle
38	chr9:100842000-100846200	Strong transcription	Brain Cingulate Gyrus	brain
39	chr9:100842000-100846200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
40	chr9:100842000-100847600	Strong transcription	Left Ventricle	heart
41	chr9:100842400-100846800	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr9:100842400-100849800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr9:100842600-100845600	Strong transcription	Stomach Smooth Muscle	stomach
44	chr9:100842600-100846400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr9:100842600-100848400	Strong transcription	Fetal Thymus	thymus
46	chr9:100842800-100845400	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:100842800-100845600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
48	chr9:100842800-100846000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:100842800-100846200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
50	chr9:100842800-100846200	Genic enhancers	Rectal Mucosa Donor 29	rectum

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