Variant report

Variant	rs4743157
Chromosome Location	chr9:100809952-100809953
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100679327..100688755-chr9:100804829..100810921,12	K562	blood:
2	chr9:100743537..100749297-chr9:100805473..100813198,12	K562	blood:
3	chr9:100745241..100747165-chr9:100808229..100811065,2	MCF-7	breast:
4	chr9:100697076..100699494-chr9:100808652..100811016,2	K562	blood:
5	chr9:100661987..100664493-chr9:100807895..100810404,2	K562	blood:
6	chr9:100796501..100799835-chr9:100807798..100809968,3	K562	blood:

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1059273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10818454	0.87[YRI][hapmap]
rs10985065	0.82[JPT][hapmap]
rs12001675	0.80[CEU][hapmap]
rs12349452	0.95[YRI][hapmap]
rs12552242	0.82[JPT][hapmap]
rs12554172	0.80[CEU][hapmap]
rs12554583	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16912622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2224773	0.86[ASN][1000 genomes]
rs2281732	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3739670	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3739672	0.87[MEX][hapmap]
rs4300105	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4394518	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4562446	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742711	0.80[CEU][hapmap]
rs4742716	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4743150	0.80[CEU][hapmap];0.87[MEX][hapmap]
rs4743158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743159	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55978131	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58427887	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478539	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.95[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478556	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6478563	0.82[JPT][hapmap]
rs7020081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7022455	0.82[JPT][hapmap]
rs7034147	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7038592	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7041811	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7046514	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846772	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7846880	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7848430	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7850685	0.80[CEU][hapmap];0.81[MEX][hapmap]
rs7852752	0.88[ASW][hapmap];0.88[YRI][hapmap]
rs7855251	0.82[JPT][hapmap]
rs7855432	0.81[MEX][hapmap]
rs7862535	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7867404	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869762	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs874610	0.80[CEU][hapmap];0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3483159	chr9:100806167-100814815	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv3483160	chr9:100806167-100814815	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4743157	TRIM14	Cis_1M	lymphoblastoid	RTeQTL
rs4743157	NANS	cis	parietal	SCAN
rs4743157	C9orf156	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100807400-100810000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:100807600-100818400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:100808000-100810600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr9:100808400-100810000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr9:100808400-100810200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr9:100808400-100810200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr9:100808400-100810600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr9:100808400-100818400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:100808400-100818400	Weak transcription	Fetal Thymus	thymus
10	chr9:100808600-100810000	Flanking Active TSS	Dnd41	blood
11	chr9:100808600-100812400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr9:100808600-100812800	Enhancers	Primary hematopoietic stem cells	blood
13	chr9:100808600-100816200	Weak transcription	Primary B cells from cord blood	blood
14	chr9:100808800-100810200	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr9:100808800-100810200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr9:100808800-100810800	Enhancers	HepG2	liver
17	chr9:100808800-100818200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr9:100808800-100818400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:100809000-100818200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr9:100809200-100811000	Transcr. at gene 5' and 3'	K562	blood
21	chr9:100809400-100810600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:100809600-100810000	Enhancers	Primary B cells from peripheral blood	blood
23	chr9:100809600-100810600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr9:100809600-100815400	Weak transcription	Primary T cells from cord blood	blood
25	chr9:100809800-100810200	Flanking Active TSS	GM12878-XiMat	blood

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