Variant report

Variant	rs4743159
Chromosome Location	chr9:100832547-100832548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100832336..100835863-chr9:100838081..100840239,3	K562	blood:
2	chr9:100683356..100686345-chr9:100832359..100837233,6	MCF-7	breast:
3	chr9:100817802..100822153-chr9:100831375..100837110,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1059273	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12554583	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16912622	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2224773	0.83[ASN][1000 genomes]
rs2281732	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3739670	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4300105	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4394518	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4562446	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4742716	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743157	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743158	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55978131	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58427887	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6478539	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6478556	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7020081	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7034147	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7038592	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7041811	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7046514	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7846772	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7846880	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7848430	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7862535	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7867404	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7869762	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4743159	TRIM14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100820000-100836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:100820000-100836600	Weak transcription	Brain Angular Gyrus	brain
5	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
6	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
8	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
9	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
11	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
12	chr9:100820200-100843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:100821000-100836400	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:100821200-100836400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:100821200-100836600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
17	chr9:100822400-100836400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr9:100822400-100836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr9:100822800-100833200	Strong transcription	Fetal Intestine Small	intestine
20	chr9:100823600-100836400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:100823800-100842000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:100824600-100836600	Weak transcription	Psoas Muscle	Psoas
23	chr9:100824600-100840000	Weak transcription	Ovary	ovary
24	chr9:100824800-100836400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:100824800-100840000	Weak transcription	Right Ventricle	heart
26	chr9:100824800-100843200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:100825000-100836400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr9:100827200-100834000	Weak transcription	Thymus	Thymus
29	chr9:100827200-100841200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:100827400-100833200	Weak transcription	Small Intestine	intestine
31	chr9:100827400-100833400	Weak transcription	Esophagus	oesophagus
32	chr9:100827400-100833400	Weak transcription	Gastric	stomach
33	chr9:100827400-100833400	Weak transcription	Spleen	Spleen
34	chr9:100827400-100833800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr9:100827400-100834000	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:100827400-100834000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr9:100827400-100834600	Strong transcription	Osteobl	bone
38	chr9:100827400-100835400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:100827400-100835400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:100827400-100836400	Weak transcription	Primary B cells from cord blood	blood
41	chr9:100827400-100836400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr9:100827400-100836600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:100827400-100836600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr9:100827400-100836600	Weak transcription	Aorta	Aorta
45	chr9:100827400-100836600	Weak transcription	NHLF	lung
46	chr9:100827400-100838400	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr9:100827600-100836400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr9:100827600-100836400	Weak transcription	Dnd41	blood
49	chr9:100827600-100836600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr9:100827600-100838200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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