Variant report

Variant	rs3739670
Chromosome Location	chr9:100819192-100819193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:34)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:34 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:20646651..20647442-chr9:100818900..100819503,2	Hela-S3	cervix:
2	chr9:100744471..100747062-chr9:100817673..100820807,4	MCF-7	breast:
3	chr9:100817834..100821135-chr9:100954026..100958556,6	MCF-7	breast:
4	chr20:43976914..43977467-chr9:100818587..100819438,2	Hela-S3	cervix:
5	chr16:2205092..2205676-chr9:100818746..100819399,2	Hela-S3	cervix:
6	chr2:62422809..62423348-chr9:100818801..100819517,2	NB4	blood:
7	chr14:20881288..20881796-chr9:100818786..100819300,2	Hela-S3	cervix:
8	chr7:26240281..26240970-chr9:100818642..100819610,2	Hela-S3	cervix:
9	chr9:100745249..100747545-chr9:100817221..100819862,3	K562	blood:
10	chr12:125398867..125399649-chr9:100818568..100819244,2	Hela-S3	cervix:
11	chr2:122288091..122288880-chr9:100818682..100819363,2	HCT-116	colon:
12	chr1:154933698..154934595-chr9:100818997..100819539,2	Hela-S3	cervix:
13	chr9:100684278..100686693-chr9:100816052..100820620,8	K562	blood:
14	chr12:112279504..112280047-chr9:100818611..100819438,2	NB4	blood:
15	chr9:100682922..100687440-chr9:100817123..100820939,8	MCF-7	breast:
16	chr5:172197932..172198453-chr9:100818801..100819368,2	Hela-S3	cervix:
17	chr9:100793900..100798932-chr9:100816820..100821233,8	MCF-7	breast:
18	chr9:100683217..100685598-chr9:100817702..100819594,2	MCF-7	breast:
19	chr9:100817689..100820206-chr9:101017310..101019410,4	MCF-7	breast:
20	chr9:100679913..100686278-chr9:100816188..100820459,11	K562	blood:
21	chr9:100818376..100820486-chr9:101016476..101019522,4	K562	blood:
22	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:
23	chr14:24740079..24740834-chr9:100818720..100819502,2	Hela-S3	cervix:
24	chr9:100677016..100678517-chr9:100817759..100820189,2	MCF-7	breast:
25	chr9:100817802..100822153-chr9:100831375..100837110,8	MCF-7	breast:
26	chr9:100818822..100821185-chr9:101017013..101019589,2	MCF-7	breast:
27	chr11:62609015..62609721-chr9:100818853..100819398,2	Hela-S3	cervix:
28	chr9:100818120..100820344-chrX:153624608..153627230,2	MCF-7	breast:
29	chr9:100817966..100819958-chr9:100840027..100843917,3	K562	blood:
30	chr9:100819004..100820789-chr9:100854136..100855949,2	K562	blood:
31	chr9:100817775..100822653-chr9:100832609..100840095,16	MCF-7	breast:
32	chr9:100743079..100747890-chr9:100817276..100822371,7	K562	blood:
33	chr9:100705974..100707868-chr9:100818803..100821487,2	K562	blood:
34	chr14:68161698..68162539-chr9:100818894..100819880,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000106789	Chromatin interaction
ENSG00000234608	Chromatin interaction
ENSG00000074054	Chromatin interaction
ENSG00000236896	Chromatin interaction
ENSG00000271380	Chromatin interaction
ENSG00000260260	Chromatin interaction
ENSG00000129566	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000150991	Chromatin interaction
ENSG00000106785	Chromatin interaction
ENSG00000143878	Chromatin interaction
ENSG00000122565	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000147403	Chromatin interaction
ENSG00000170340	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000124145	Chromatin interaction
ENSG00000212521	Chromatin interaction
ENSG00000201830	Chromatin interaction
ENSG00000264229	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000072042	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000120129	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000089022	Chromatin interaction
ENSG00000163348	Chromatin interaction
ENSG00000206630	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1059273	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12554583	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16912622	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2224773	0.88[ASN][1000 genomes]
rs2281732	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4300105	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4394518	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4562446	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4742716	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743157	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743158	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743159	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55978131	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58427887	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478539	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478556	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7020081	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7034147	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038592	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7041811	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046514	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7846772	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7846880	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7848430	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7862535	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7867404	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7869762	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3739670	TRIM14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100818200-100819800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:100818200-100820200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr9:100818200-100820200	Active TSS	A549	lung
4	chr9:100818200-100820400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:100818200-100820400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:100818200-100821000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:100818400-100819400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:100818400-100819400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:100818400-100819400	Active TSS	Brain Germinal Matrix	brain
10	chr9:100818400-100819400	Active TSS	Fetal Brain Female	brain
11	chr9:100818400-100819600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:100818400-100819600	Active TSS	Liver	Liver
13	chr9:100818400-100819600	Active TSS	Brain Hippocampus Middle	brain
14	chr9:100818400-100819600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr9:100818400-100819600	Active TSS	Colon Smooth Muscle	Colon
16	chr9:100818400-100819600	Active TSS	Fetal Intestine Large	intestine
17	chr9:100818400-100819600	Active TSS	Rectal Smooth Muscle	rectum
18	chr9:100818400-100819800	Active TSS	H1 Cell Line	embryonic stem cell
19	chr9:100818400-100819800	Active TSS	H9 Cell Line	embryonic stem cell
20	chr9:100818400-100819800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:100818400-100819800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:100818400-100819800	Active TSS	Brain Angular Gyrus	brain
23	chr9:100818400-100819800	Active TSS	Brain Anterior Caudate	brain
24	chr9:100818400-100819800	Active TSS	Brain Substantia Nigra	brain
25	chr9:100818400-100819800	Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr9:100818400-100819800	Active TSS	Fetal Kidney	kidney
27	chr9:100818400-100819800	Active TSS	Left Ventricle	heart
28	chr9:100818400-100819800	Active TSS	Ovary	ovary
29	chr9:100818400-100819800	Active TSS	NH-A	brain
30	chr9:100818400-100820000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
31	chr9:100818400-100820000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:100818400-100820000	Active TSS	Aorta	Aorta
33	chr9:100818400-100820000	Active TSS	Fetal Intestine Small	intestine
34	chr9:100818400-100820000	Active TSS	Pancreatic Islets	Pancreatic Islet
35	chr9:100818400-100820200	Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr9:100818400-100820200	Active TSS	HUES48 Cell Line	embryonic stem cell
37	chr9:100818400-100820200	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr9:100818400-100820200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:100818400-100820200	Active TSS	Right Ventricle	heart
40	chr9:100818400-100820200	Active TSS	NHDF-Ad	bronchial
41	chr9:100818400-100820400	Active TSS	Breast Myoepithelial Primary Cells	Breast
42	chr9:100818400-100820400	Active TSS	Stomach Mucosa	stomach
43	chr9:100818400-100820400	Active TSS	HSMM	muscle
44	chr9:100818400-100820600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:100818400-100820800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:100818400-100820800	Active TSS	Psoas Muscle	Psoas
47	chr9:100818400-100820800	Active TSS	Sigmoid Colon	Sigmoid Colon
48	chr9:100818400-100820800	Active TSS	Small Intestine	intestine
49	chr9:100818400-100820800	Active TSS	NHLF	lung
50	chr9:100818400-100821200	Active TSS	Colonic Mucosa	Colon

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