Variant report

Variant	rs7020081
Chromosome Location	chr9:100823360-100823361
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100823141..100827568-chr9:100835845..100837989,3	MCF-7	breast:
2	chr9:100746648..100748229-chr9:100822412..100824498,2	MCF-7	breast:
3	chr9:100739257..100741486-chr9:100821509..100823548,2	K562	blood:
4	chr9:100822595..100824589-chr9:100834188..100836915,2	MCF-7	breast:
5	chr9:100817784..100820803-chr9:100821828..100828564,14	MCF-7	breast:
6	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction
ENSG00000236896	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1059273	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12001675	0.82[CEU][hapmap]
rs12554172	0.82[CEU][hapmap]
rs12554583	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16912622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2224773	0.90[ASN][1000 genomes]
rs2281732	0.95[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3739670	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4300105	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4394518	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4562446	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4742711	0.82[CEU][hapmap]
rs4742716	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743150	0.80[CEU][hapmap]
rs4743157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743159	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55978131	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58427887	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478539	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478556	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7034147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7038592	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041811	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7046514	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7846772	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7846880	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7848430	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7850685	0.80[CEU][hapmap]
rs7862535	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867404	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7869762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs874610	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7020081	TRIM14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100824200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr9:100820000-100826800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:100820000-100826800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:100820000-100828400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:100820000-100836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:100820000-100836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:100820000-100836600	Weak transcription	Brain Angular Gyrus	brain
9	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
10	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
12	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
13	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
15	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
16	chr9:100820200-100824000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:100820200-100825800	Weak transcription	Primary B cells from cord blood	blood
18	chr9:100820200-100843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr9:100820600-100824200	Weak transcription	Brain Anterior Caudate	brain
20	chr9:100820600-100825800	Weak transcription	Fetal Lung	lung
21	chr9:100820600-100826200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:100820600-100826200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr9:100820800-100824200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:100821000-100826200	Weak transcription	NH-A	brain
25	chr9:100821000-100827000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr9:100821000-100836400	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:100821200-100824200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr9:100821200-100824200	Weak transcription	HUVEC	blood vessel
29	chr9:100821200-100826200	Weak transcription	Dnd41	blood
30	chr9:100821200-100826200	Weak transcription	HMEC	breast
31	chr9:100821200-100826400	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:100821200-100826600	Weak transcription	Small Intestine	intestine
33	chr9:100821200-100836400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr9:100821200-100836600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
36	chr9:100821400-100824400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr9:100821400-100828200	Weak transcription	NHDF-Ad	bronchial
38	chr9:100821600-100832400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:100822000-100823400	Genic enhancers	HepG2	liver
40	chr9:100822000-100824200	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:100822000-100824200	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr9:100822000-100827200	Strong transcription	NHEK	skin
43	chr9:100822200-100823400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:100822200-100832200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr9:100822200-100832400	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr9:100822400-100823400	Genic enhancers	Rectal Mucosa Donor 31	rectum
47	chr9:100822400-100826800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:100822400-100828600	Weak transcription	Stomach Mucosa	stomach
49	chr9:100822400-100829800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:100822400-100832200	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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