Variant report

Variant	rs7041811
Chromosome Location	chr9:100821028-100821029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100820519..100823041-chr9:100848922..100851897,2	K562	blood:
2	chr9:100820689..100822776-chr9:100823410..100826294,2	MCF-7	breast:
3	chr9:100817834..100821135-chr9:100954026..100958556,6	MCF-7	breast:
4	chr9:100793900..100798932-chr9:100816820..100821233,8	MCF-7	breast:
5	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:
6	chr9:100817802..100822153-chr9:100831375..100837110,8	MCF-7	breast:
7	chr9:100818822..100821185-chr9:101017013..101019589,2	MCF-7	breast:
8	chr9:100817775..100822653-chr9:100832609..100840095,16	MCF-7	breast:
9	chr9:100743079..100747890-chr9:100817276..100822371,7	K562	blood:
10	chr9:100705974..100707868-chr9:100818803..100821487,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106789	Chromatin interaction
ENSG00000136929	Chromatin interaction
ENSG00000212521	Chromatin interaction
ENSG00000106785	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000095383	Chromatin interaction
ENSG00000236896	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1059273	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10818454	0.80[AFR][1000 genomes]
rs12554583	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16912622	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2224773	0.88[ASN][1000 genomes]
rs2281732	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3739670	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4300105	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4394518	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4562446	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4742716	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743157	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743159	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55978131	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58427887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6478539	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6478556	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7020081	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7034147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038592	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7046514	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7846772	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7846880	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7848430	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7862535	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7867404	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7869762	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7041811	TRIM14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100818400-100821200	Active TSS	Colonic Mucosa	Colon
2	chr9:100819200-100821200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:100819600-100821200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr9:100819600-100821200	Enhancers	Spleen	Spleen
5	chr9:100819600-100821200	Flanking Active TSS	Osteobl	bone
6	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:100820000-100821200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr9:100820000-100821200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr9:100820000-100821200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
10	chr9:100820000-100821200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:100820000-100821200	Enhancers	Placenta	Placenta
12	chr9:100820000-100821200	Active TSS	Rectal Smooth Muscle	rectum
13	chr9:100820000-100821200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr9:100820000-100821400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr9:100820000-100821400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:100820000-100822000	Enhancers	Primary T cells fromperipheralblood	blood
17	chr9:100820000-100822800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:100820000-100823000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:100820000-100823000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:100820000-100823000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:100820000-100823000	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:100820000-100823000	Weak transcription	Left Ventricle	heart
23	chr9:100820000-100823000	Weak transcription	Lung	lung
24	chr9:100820000-100823200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:100820000-100823200	Weak transcription	Aorta	Aorta
26	chr9:100820000-100823200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:100820000-100823200	Weak transcription	Ovary	ovary
28	chr9:100820000-100824200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:100820000-100826800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr9:100820000-100826800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:100820000-100828400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr9:100820000-100836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr9:100820000-100836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr9:100820000-100836600	Weak transcription	Brain Angular Gyrus	brain
35	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
36	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
38	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
39	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
41	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
42	chr9:100820200-100821200	Enhancers	Primary T cells from cord blood	blood
43	chr9:100820200-100821200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:100820200-100821200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:100820200-100821200	Enhancers	Adipose Nuclei	Adipose
46	chr9:100820200-100821200	Enhancers	Dnd41	blood
47	chr9:100820200-100821200	Enhancers	HMEC	breast
48	chr9:100820200-100821200	Enhancers	HUVEC	blood vessel
49	chr9:100820200-100821400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr9:100820200-100821600	Enhancers	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links