Variant report

Variant	rs7846880
Chromosome Location	chr9:100822940-100822941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100820519..100823041-chr9:100848922..100851897,2	K562	blood:
2	chr9:100746648..100748229-chr9:100822412..100824498,2	MCF-7	breast:
3	chr9:100739257..100741486-chr9:100821509..100823548,2	K562	blood:
4	chr9:100822595..100824589-chr9:100834188..100836915,2	MCF-7	breast:
5	chr9:100817784..100820803-chr9:100821828..100828564,14	MCF-7	breast:
6	chr9:100742340..100750312-chr9:100816953..100823782,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction
ENSG00000106785	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000236896	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1059273	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12554583	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16912622	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2224773	0.88[ASN][1000 genomes]
rs2281732	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3739670	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4300105	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4394518	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4562446	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4742716	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743157	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743159	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55978131	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58427887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6478539	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6478556	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7020081	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7034147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7038592	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7041811	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7046514	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7846772	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7848430	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7862535	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7867404	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7869762	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7846880	TRIM14	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100823000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr9:100820000-100823000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:100820000-100823000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:100820000-100823000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:100820000-100823000	Weak transcription	Left Ventricle	heart
7	chr9:100820000-100823000	Weak transcription	Lung	lung
8	chr9:100820000-100823200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:100820000-100823200	Weak transcription	Aorta	Aorta
10	chr9:100820000-100823200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:100820000-100823200	Weak transcription	Ovary	ovary
12	chr9:100820000-100824200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:100820000-100826800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:100820000-100826800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:100820000-100828400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr9:100820000-100836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:100820000-100836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:100820000-100836600	Weak transcription	Brain Angular Gyrus	brain
19	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
20	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
22	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
23	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
25	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
26	chr9:100820200-100823000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:100820200-100823000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:100820200-100823000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:100820200-100823000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:100820200-100823000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr9:100820200-100823000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr9:100820200-100823000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:100820200-100823000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr9:100820200-100823000	Weak transcription	Fetal Thymus	thymus
35	chr9:100820200-100823000	Weak transcription	Pancreas	Pancrea
36	chr9:100820200-100823000	Weak transcription	Thymus	Thymus
37	chr9:100820200-100823000	Weak transcription	A549	lung
38	chr9:100820200-100823200	Weak transcription	Right Ventricle	heart
39	chr9:100820200-100824000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr9:100820200-100825800	Weak transcription	Primary B cells from cord blood	blood
41	chr9:100820200-100843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr9:100820600-100823000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr9:100820600-100823000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr9:100820600-100824200	Weak transcription	Brain Anterior Caudate	brain
45	chr9:100820600-100825800	Weak transcription	Fetal Lung	lung
46	chr9:100820600-100826200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:100820600-100826200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr9:100820800-100823000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr9:100820800-100823000	Weak transcription	NHLF	lung
50	chr9:100820800-100824200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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