Variant report

Variant	rs2378402
Chromosome Location	chr1:220841024-220841025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10863561	0.82[AMR][1000 genomes]
rs12410279	0.80[ASN][1000 genomes]
rs2253641	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2378401	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2786604	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2786607	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2993209	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2994527	0.83[AMR][1000 genomes]
rs3737296	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4011894	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4846657	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61830219	0.81[ASN][1000 genomes]
rs6541155	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6677302	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6699189	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6699196	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7514431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220791200-220841200	Weak transcription	HMEC	breast
2	chr1:220829400-220847200	Weak transcription	Right Ventricle	heart
3	chr1:220829600-220845800	Weak transcription	Fetal Heart	heart
4	chr1:220831400-220845800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:220836200-220842800	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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