Variant report

Variant	rs2420591
Chromosome Location	chr7:65912381-65912382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 187 )
Associated
traits (count: 26 )

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs1000464	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs1002053	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10107	0.89[CEU][hapmap]
rs10215948	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10224872	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs10228885	0.89[CEU][hapmap]
rs10249404	0.86[YRI][hapmap]
rs10257427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10260426	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs10261398	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap]
rs10263935	0.91[YRI][hapmap]
rs10267430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10278014	0.88[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs10282433	0.89[CEU][hapmap];0.83[CHB][hapmap];0.89[TSI][hapmap]
rs10447522	0.89[CEU][hapmap]
rs10755833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807704	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10950041	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10950044	0.91[YRI][hapmap]
rs11760844	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs11765965	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11984115	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs12532998	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533997	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12535036	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12537823	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap]
rs12668936	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12673450	0.89[CEU][hapmap]
rs12673810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698520	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12698521	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698523	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12698532	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13227219	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13309022	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13536	0.89[CEU][hapmap];0.81[GIH][hapmap];0.86[TSI][hapmap]
rs1363055	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1695815	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1695820	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs1807064	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1833495	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1860469	0.92[CEU][hapmap]
rs1875057	0.88[CEU][hapmap];0.83[GIH][hapmap];0.86[TSI][hapmap]
rs1968225	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1974769	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981798	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1981799	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2036264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2042133	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2077593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2088653	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs2088655	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs2161065	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2173570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2191268	0.84[MKK][hapmap];0.86[YRI][hapmap]
rs2277911	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2302918	0.90[YRI][hapmap]
rs2420599	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420608	0.81[AMR][1000 genomes]
rs2901152	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs34406470	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35149210	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35410151	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3735148	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3764903	0.81[ASW][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];0.91[YRI][hapmap]
rs3857684	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3935391	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3981131	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4149461	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap]
rs4236208	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[GIH][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs4717292	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4717299	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717300	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718330	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs4718343	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4718344	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4718349	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4718357	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4718358	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4718383	0.89[CEU][hapmap]
rs55748098	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60193905	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6460291	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6460292	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.96[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6460293	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs6460295	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6460296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6460300	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6460302	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs6460304	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs6460305	0.81[ASW][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];0.86[YRI][hapmap]
rs6460307	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs6460308	0.91[YRI][hapmap]
rs6943696	0.91[YRI][hapmap]
rs6945019	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6945032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6945843	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs6947339	0.89[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap]
rs6949920	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6950137	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs6951503	0.85[CEU][hapmap]
rs6952407	0.91[YRI][hapmap]
rs6955837	0.89[CEU][hapmap]
rs6956179	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6957199	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6958200	0.80[EUR][1000 genomes]
rs6958271	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6958277	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6959268	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap]
rs6960446	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs6960476	0.82[EUR][1000 genomes]
rs6961155	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6961990	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6962717	0.89[CEU][hapmap];0.90[CHB][hapmap]
rs6967996	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6970030	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6970357	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6970860	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6971509	1.00[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs6976714	0.81[AMR][1000 genomes]
rs6978429	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6978721	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6979382	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs709595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs709597	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7778322	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7781061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781698	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7782704	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs7783613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7783779	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs778682	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778685	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778689	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778692	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778694	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778695	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778697	0.89[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap]
rs778699	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778700	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778702	0.88[CEU][hapmap]
rs778706	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778708	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778709	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778710	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778711	0.89[CEU][hapmap]
rs778712	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs778720	0.87[CEU][hapmap];0.84[CHB][hapmap]
rs778721	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs778723	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778726	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs778727	0.82[AMR][1000 genomes]
rs778734	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs778735	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs778736	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs7788984	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789554	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7789768	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7791891	0.80[ASN][1000 genomes]
rs7792762	0.81[EUR][1000 genomes]
rs7794930	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7798630	0.89[CEU][hapmap]
rs7799834	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7803416	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7803424	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs801195	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs801204	0.92[CEU][hapmap]
rs801205	0.91[YRI][hapmap]
rs801217	0.95[YRI][hapmap]
rs937495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs949930	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs9691480	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791713	0.89[CEU][hapmap];0.84[TSI][hapmap]
rs9791895	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9969301	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9986696	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	esv1802195	chr7:65886451-65945211	Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1027068	chr7:65901543-65991211	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv966832	chr7:65901934-65916028	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3447484	chr7:65909457-66033145	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:26)

SNP	Gene	Cis/trans	Tissue	Source
rs2420591	GS1-124K5.4	cis	Artery Aorta	GTEx
rs2420591	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs2420591	TPST1	cis	lymphoblastoid	seeQTL
rs2420591	GTF2IRD1P1	cis	Thyroid	GTEx
rs2420591	ASL	cis	cerebellum	SCAN
rs2420591	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs2420591	GUSB	cis	parietal	SCAN
rs2420591	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs2420591	GS1-124K5.11	cis	Thyroid	GTEx
rs2420591	RP4-756H11.3	cis	lung	GTEx
rs2420591	CRCP	cis	cerebellum	SCAN
rs2420591	RP4-756H11.3	cis	Artery Aorta	GTEx
rs2420591	GUSB	cis	cerebellum	SCAN
rs2420591	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs2420591	RNU6-96P	cis	Thyroid	GTEx
rs2420591	RABGEF1	cis	parietal	SCAN
rs2420591	GS1-124K5.4	cis	Stomach	GTEx
rs2420591	KCTD7	cis	parietal	SCAN
rs2420591	RABGEF1	cis	cerebellum	SCAN
rs2420591	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs2420591	GS1-124K5.4	cis	Whole Blood	GTEx
rs2420591	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs2420591	RP4-756H11.3	cis	Muscle Skeletal	GTEx
rs2420591	RP4-756H11.3	cis	Artery Tibial	GTEx
rs2420591	RP4-756H11.3	cis	Thyroid	GTEx
rs2420591	RP4-756H11.3	cis	Nerve Tibial	GTEx

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65879000-65922200	Weak transcription	Small Intestine	intestine
2	chr7:65879200-65924600	Weak transcription	Brain Anterior Caudate	brain
3	chr7:65879200-65939800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:65879200-65946000	Weak transcription	NHEK	skin
5	chr7:65879200-65957600	Weak transcription	Psoas Muscle	Psoas
6	chr7:65879400-65914200	Weak transcription	Left Ventricle	heart
7	chr7:65879400-65914200	Weak transcription	GM12878-XiMat	blood
8	chr7:65879400-65917200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:65879400-65921000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:65879400-65921400	Weak transcription	Fetal Kidney	kidney
11	chr7:65879600-65913600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:65879600-65919000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:65879600-65920400	Weak transcription	Primary B cells from cord blood	blood
14	chr7:65879800-65913600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:65884000-65919600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr7:65886000-65913600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr7:65886600-65920400	Weak transcription	Right Ventricle	heart
18	chr7:65887000-65924600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr7:65887000-65924600	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:65889200-65939600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr7:65889600-65913800	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:65890000-65928800	Weak transcription	Adipose Nuclei	Adipose
23	chr7:65890400-65916200	Weak transcription	Fetal Thymus	thymus
24	chr7:65891600-65939000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:65892000-65931800	Weak transcription	Ovary	ovary
26	chr7:65893200-65913400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:65894200-65939200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:65894800-65914000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:65895200-65913400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:65897600-65913200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr7:65898200-65938200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:65900200-65913600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:65900200-65913800	Weak transcription	Fetal Stomach	stomach
34	chr7:65903000-65922000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:65904400-65939000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr7:65905000-65913200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:65905600-65938600	Weak transcription	Pancreas	Pancrea
38	chr7:65905600-65957600	Weak transcription	Fetal Lung	lung
39	chr7:65906000-65940200	Weak transcription	Fetal Intestine Large	intestine
40	chr7:65906200-65938600	Weak transcription	Lung	lung
41	chr7:65907600-65915800	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr7:65907800-65912400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:65908000-65913600	Weak transcription	Liver	Liver
44	chr7:65908000-65923600	Weak transcription	K562	blood
45	chr7:65909200-65914600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr7:65909200-65916800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:65909200-65917000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr7:65909400-65915200	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr7:65909600-65919200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr7:65909600-65919400	Weak transcription	Primary hematopoietic stem cells	blood

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