The 2.0 version of rSNPBase

Variant report

Variant rs2689678
Chromosome Location chr1:77687499-77687500
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:77685200-77687800 Weak transcription Spleen Spleen
2 chr1:77685400-77688000 Weak transcription Gastric stomach
3 chr1:77685400-77689600 Weak transcription Esophagus oesophagus
4 chr1:77685600-77693400 Weak transcription Pancreas Pancrea
5 chr1:77685800-77687600 Weak transcription Fetal Stomach stomach
6 chr1:77685800-77687800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:77685800-77687800 Weak transcription H9 Cell Line embryonic stem cell
8 chr1:77685800-77687800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr1:77685800-77687800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr1:77685800-77687800 Weak transcription Aorta Aorta
11 chr1:77685800-77688400 Weak transcription Right Atrium heart
12 chr1:77685800-77688600 Weak transcription Fetal Adrenal Gland Adrenal Gland
13 chr1:77685800-77688600 Weak transcription Fetal Thymus thymus
14 chr1:77685800-77688600 Weak transcription Psoas Muscle Psoas
15 chr1:77685800-77688800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
16 chr1:77685800-77689000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr1:77685800-77689600 Weak transcription Primary T cells fromperipheralblood blood
18 chr1:77685800-77689600 Weak transcription Ovary ovary
19 chr1:77685800-77690000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr1:77685800-77692400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr1:77685800-77695600 Weak transcription Left Ventricle heart
22 chr1:77686000-77687800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:77686000-77688000 Weak transcription iPS-15b Cell Line embryonic stem cell
24 chr1:77686000-77688000 Weak transcription iPS-18 Cell Line embryonic stem cell
25 chr1:77686000-77688000 Weak transcription Fetal Intestine Large intestine
26 chr1:77686000-77688000 Weak transcription Fetal Intestine Small intestine
27 chr1:77686000-77688600 Weak transcription Fetal Brain Female brain
28 chr1:77686000-77688600 Weak transcription Right Ventricle heart
29 chr1:77686000-77689000 Weak transcription HSMM muscle
30 chr1:77686000-77689600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr1:77686000-77689600 Weak transcription Thymus Thymus
32 chr1:77686000-77690600 Weak transcription Primary B cells from cord blood blood
33 chr1:77686000-77690800 Weak transcription Fetal Brain Male brain
34 chr1:77686000-77691600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr1:77686000-77692200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr1:77686000-77692400 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:77686000-77694600 Weak transcription Brain Cingulate Gyrus brain
38 chr1:77686000-77694600 Weak transcription Fetal Kidney kidney
39 chr1:77686000-77699200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr1:77686200-77687600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr1:77686200-77688000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
42 chr1:77686200-77688800 Weak transcription Brain Inferior Temporal Lobe brain
43 chr1:77686200-77689000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
44 chr1:77686200-77689600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
45 chr1:77686200-77690200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:77686400-77687600 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
47 chr1:77686400-77688400 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
48 chr1:77686600-77687600 Strong transcription H1 Cell Line embryonic stem cell
49 chr1:77686600-77687800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr1:77686600-77688000 Weak transcription Liver Liver

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Last update: Aug 31, 2015