Variant report

Variant	rs2753423
Chromosome Location	chr6:82257799-82257800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1341224	0.89[EUR][1000 genomes]
rs1592044	0.92[EUR][1000 genomes]
rs16893192	0.92[EUR][1000 genomes]
rs16893194	0.89[EUR][1000 genomes]
rs16893209	0.92[EUR][1000 genomes]
rs1923149	0.92[EUR][1000 genomes]
rs1935003	0.92[EUR][1000 genomes]
rs2153645	0.92[EUR][1000 genomes]
rs2185588	0.86[EUR][1000 genomes]
rs2211283	0.92[EUR][1000 genomes]
rs2226075	0.92[EUR][1000 genomes]
rs2753426	0.84[EUR][1000 genomes]
rs4142950	0.86[EUR][1000 genomes]
rs4706899	0.86[EUR][1000 genomes]
rs56048530	0.92[EUR][1000 genomes]
rs59131186	0.92[EUR][1000 genomes]
rs6454227	0.86[EUR][1000 genomes]
rs6454228	0.86[EUR][1000 genomes]
rs6900544	0.92[EUR][1000 genomes]
rs73749187	0.92[EUR][1000 genomes]
rs7739492	0.92[EUR][1000 genomes]
rs9344198	0.86[EUR][1000 genomes]
rs9344200	0.86[EUR][1000 genomes]
rs9353019	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82244000-82259000	Weak transcription	Placenta	Placenta
2	chr6:82253200-82264400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:82253400-82260800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:82256400-82260800	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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