Variant report

Variant	rs16893192
Chromosome Location	chr6:82243789-82243790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1341224	0.97[EUR][1000 genomes]
rs1361548	0.85[EUR][1000 genomes]
rs1592044	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16893194	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16893209	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1923149	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1935003	1.00[EUR][1000 genomes]
rs2153645	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2185588	0.94[EUR][1000 genomes]
rs2211283	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2226075	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2753423	0.92[EUR][1000 genomes]
rs2753426	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2793333	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4142950	0.94[EUR][1000 genomes]
rs4623287	0.87[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706143	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706899	0.94[EUR][1000 genomes]
rs56048530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59131186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454227	0.94[EUR][1000 genomes]
rs6454228	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6900544	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6928794	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs725762	0.87[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73749187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7451367	0.83[AMR][1000 genomes]
rs7739492	1.00[EUR][1000 genomes]
rs9344198	0.94[EUR][1000 genomes]
rs9344200	0.94[EUR][1000 genomes]
rs9353019	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82242600-82245000	Weak transcription	Placenta Amnion	Placenta Amnion

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