Variant report

Variant	rs6454227
Chromosome Location	chr6:82278722-82278723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82271462..82274073-chr6:82275902..82278747,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1145876	1.00[AMR][1000 genomes]
rs1145882	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145883	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145885	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145886	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1145888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1276878	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1341224	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361548	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592044	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893192	0.94[EUR][1000 genomes]
rs16893194	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893209	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1917064	0.87[AFR][1000 genomes]
rs1923149	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1935003	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2153645	1.00[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185588	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2211283	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226075	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2753423	0.86[EUR][1000 genomes]
rs2753426	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2759451	1.00[ASN][1000 genomes]
rs2793331	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2793333	1.00[ASN][1000 genomes]
rs4142950	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4623287	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs4706143	1.00[ASN][1000 genomes]
rs4706899	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706900	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56048530	0.94[EUR][1000 genomes]
rs59131186	0.94[EUR][1000 genomes]
rs6454228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6454232	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899579	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6900544	1.00[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725762	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs73749187	0.94[EUR][1000 genomes]
rs7451367	0.82[EUR][1000 genomes]
rs7739492	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755160	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9344198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344206	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9353019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82272600-82281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:82277800-82279000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:82278400-82279400	Enhancers	Dnd41	blood

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